Protein–RNA interactions for Protein: B0FP48

UPK3BL1, Uroplakin-3b-like protein 1, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK3BL1B0FP48 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC3.17□□□□□ -1.9
UPK3BL1B0FP48 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC3.17□□□□□ -1.9
UPK3BL1B0FP48 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC3.16□□□□□ -1.9
UPK3BL1B0FP48 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
UPK3BL1B0FP48 AL365361.1-201ENST00000566942 3481 ntBASIC3.16□□□□□ -1.9
UPK3BL1B0FP48 RNU6-461P-201ENST00000364195 107 ntBASIC3.16□□□□□ -1.9
UPK3BL1B0FP48 SNORA72-201ENST00000384339 132 ntBASIC3.16□□□□□ -1.9
UPK3BL1B0FP48 RNU2-55P-201ENST00000411146 174 ntBASIC3.16□□□□□ -1.9
UPK3BL1B0FP48 RN7SKP101-201ENST00000411376 320 ntBASIC3.16□□□□□ -1.9
UPK3BL1B0FP48 AC016909.1-201ENST00000415916 166 ntBASIC3.16□□□□□ -1.9
UPK3BL1B0FP48 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC3.16□□□□□ -1.9
UPK3BL1B0FP48 AC008267.6-201ENST00000441664 139 ntBASIC3.16□□□□□ -1.9
UPK3BL1B0FP48 MTCO1P44-201ENST00000441935 243 ntBASIC3.16□□□□□ -1.9
UPK3BL1B0FP48 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC3.16□□□□□ -1.9
UPK3BL1B0FP48 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC3.16□□□□□ -1.9
UPK3BL1B0FP48 AC093259.1-201ENST00000509755 300 ntBASIC3.16□□□□□ -1.9
UPK3BL1B0FP48 AC008885.1-201ENST00000514930 301 ntBASIC3.16□□□□□ -1.9
UPK3BL1B0FP48 RNA5SP356-201ENST00000515972 94 ntBASIC3.16□□□□□ -1.9
UPK3BL1B0FP48 SCARNA20.6-201ENST00000517251 106 ntBASIC3.16□□□□□ -1.9
UPK3BL1B0FP48 AC112693.2-201ENST00000556538 232 ntBASIC3.16□□□□□ -1.9
UPK3BL1B0FP48 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC3.16□□□□□ -1.9
UPK3BL1B0FP48 UBL5P2-201ENST00000583788 219 ntBASIC3.16□□□□□ -1.9
UPK3BL1B0FP48 MIR3658-201ENST00000636291 56 ntBASIC3.16□□□□□ -1.9
UPK3BL1B0FP48 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC3.15□□□□□ -1.9
UPK3BL1B0FP48 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC3.15□□□□□ -1.91
UPK3BL1B0FP48 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC3.15□□□□□ -1.91
UPK3BL1B0FP48 SNORA48.8-201ENST00000391324 134 ntBASIC3.15□□□□□ -1.91
UPK3BL1B0FP48 RNA5SP511-201ENST00000410487 115 ntBASIC3.15□□□□□ -1.91
UPK3BL1B0FP48 SNORA25.12-201ENST00000516202 82 ntBASIC3.15□□□□□ -1.91
UPK3BL1B0FP48 AC027419.1-201ENST00000522976 328 ntBASIC3.15□□□□□ -1.91
UPK3BL1B0FP48 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC3.15□□□□□ -1.91
UPK3BL1B0FP48 AC015720.1-201ENST00000565251 277 ntBASIC3.15□□□□□ -1.91
UPK3BL1B0FP48 ELOCP29-201ENST00000588193 334 ntBASIC3.15□□□□□ -1.91
UPK3BL1B0FP48 SNORA50A-202ENST00000629536 136 ntBASIC3.15□□□□□ -1.91
UPK3BL1B0FP48 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC3.15□□□□□ -1.91
UPK3BL1B0FP48 AC100821.1-201ENST00000523153 2479 ntBASIC3.15□□□□□ -1.91
UPK3BL1B0FP48 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
UPK3BL1B0FP48 RNU4-13P-201ENST00000364019 141 ntBASIC3.14□□□□□ -1.91
UPK3BL1B0FP48 Y_RNA.332-201ENST00000365271 113 ntBASIC3.14□□□□□ -1.91
UPK3BL1B0FP48 MIR539-201ENST00000365690 78 ntBASIC3.14□□□□□ -1.91
UPK3BL1B0FP48 MIR181A2-201ENST00000384863 110 ntBASIC3.14□□□□□ -1.91
UPK3BL1B0FP48 RNU6-220P-201ENST00000390919 107 ntBASIC3.14□□□□□ -1.91
UPK3BL1B0FP48 RN7SKP220-201ENST00000410611 288 ntBASIC3.14□□□□□ -1.91
UPK3BL1B0FP48 AC123900.1-201ENST00000420390 96 ntBASIC3.14□□□□□ -1.91
UPK3BL1B0FP48 AC003685.2-201ENST00000422795 395 ntBASIC3.14□□□□□ -1.91
UPK3BL1B0FP48 MTND4LP9-201ENST00000427694 174 ntBASIC3.14□□□□□ -1.91
UPK3BL1B0FP48 RPS27P1-201ENST00000450552 247 ntBASIC3.14□□□□□ -1.91
UPK3BL1B0FP48 SNRPGP8-201ENST00000454064 226 ntBASIC3.14□□□□□ -1.91
UPK3BL1B0FP48 RPS27P22-201ENST00000478056 241 ntBASIC3.14□□□□□ -1.91
UPK3BL1B0FP48 SNORA4.4-201ENST00000515921 135 ntBASIC3.14□□□□□ -1.91
UPK3BL1B0FP48 RNA5SP272-201ENST00000516095 111 ntBASIC3.14□□□□□ -1.91
UPK3BL1B0FP48 AC104027.1-201ENST00000521887 300 ntBASIC3.14□□□□□ -1.91
UPK3BL1B0FP48 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC3.14□□□□□ -1.91
UPK3BL1B0FP48 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC3.14□□□□□ -1.91
UPK3BL1B0FP48 MIR6844-201ENST00000637122 62 ntBASIC3.14□□□□□ -1.91
UPK3BL1B0FP48 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
UPK3BL1B0FP48 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC3.13□□□□□ -1.91
UPK3BL1B0FP48 RNA5SP432-201ENST00000362480 116 ntBASIC3.13□□□□□ -1.91
UPK3BL1B0FP48 Y_RNA.393-201ENST00000383936 102 ntBASIC3.13□□□□□ -1.91
UPK3BL1B0FP48 SNORA22C-201ENST00000384614 134 ntBASIC3.13□□□□□ -1.91
UPK3BL1B0FP48 SNORD15B-201ENST00000384714 146 ntBASIC3.13□□□□□ -1.91
UPK3BL1B0FP48 SNORD37.2-201ENST00000391075 66 ntBASIC3.13□□□□□ -1.91
UPK3BL1B0FP48 AC063976.3-201ENST00000426849 329 ntBASIC3.13□□□□□ -1.91
UPK3BL1B0FP48 RNU7-197P-201ENST00000458836 62 ntBASIC3.13□□□□□ -1.91
UPK3BL1B0FP48 RNU6-63P-201ENST00000516690 95 ntBASIC3.13□□□□□ -1.91
UPK3BL1B0FP48 RNU6-1231P-201ENST00000517185 103 ntBASIC3.13□□□□□ -1.91
UPK3BL1B0FP48 AL160236.1-201ENST00000556317 195 ntBASIC3.13□□□□□ -1.91
UPK3BL1B0FP48 MIR2681-201ENST00000581814 105 ntBASIC3.13□□□□□ -1.91
UPK3BL1B0FP48 MIR3117-201ENST00000584034 78 ntBASIC3.13□□□□□ -1.91
UPK3BL1B0FP48 AL021707.8-201ENST00000609428 183 ntBASIC3.13□□□□□ -1.91
UPK3BL1B0FP48 TUG1_4.1-201ENST00000619464 181 ntBASIC3.13□□□□□ -1.91
UPK3BL1B0FP48 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
UPK3BL1B0FP48 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
UPK3BL1B0FP48 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC3.12□□□□□ -1.91
UPK3BL1B0FP48 RNU6-1290P-201ENST00000362957 109 ntBASIC3.12□□□□□ -1.91
UPK3BL1B0FP48 RNU1-22P-201ENST00000363334 158 ntBASIC3.12□□□□□ -1.91
UPK3BL1B0FP48 RNU1-23P-201ENST00000363361 144 ntBASIC3.12□□□□□ -1.91
UPK3BL1B0FP48 RNU4-41P-201ENST00000364426 143 ntBASIC3.12□□□□□ -1.91
UPK3BL1B0FP48 Y_RNA.521-201ENST00000384560 114 ntBASIC3.12□□□□□ -1.91
UPK3BL1B0FP48 SNORA79-201ENST00000408376 140 ntBASIC3.12□□□□□ -1.91
UPK3BL1B0FP48 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC3.12□□□□□ -1.91
UPK3BL1B0FP48 SNORA64.4-201ENST00000516632 81 ntBASIC3.12□□□□□ -1.91
UPK3BL1B0FP48 AL365222.1-201ENST00000614661 98 ntBASIC3.12□□□□□ -1.91
UPK3BL1B0FP48 MIR6715A-201ENST00000615929 79 ntBASIC3.12□□□□□ -1.91
UPK3BL1B0FP48 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC3.12□□□□□ -1.91
UPK3BL1B0FP48 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.12□□□□□ -1.91
UPK3BL1B0FP48 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC3.12□□□□□ -1.91
UPK3BL1B0FP48 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC3.12□□□□□ -1.91
UPK3BL1B0FP48 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.12□□□□□ -1.91
UPK3BL1B0FP48 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
UPK3BL1B0FP48 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC3.12□□□□□ -1.91
UPK3BL1B0FP48 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
UPK3BL1B0FP48 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC3.11□□□□□ -1.91
UPK3BL1B0FP48 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC3.11□□□□□ -1.91
UPK3BL1B0FP48 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC3.11□□□□□ -1.91
UPK3BL1B0FP48 SNORD45.3-201ENST00000363836 72 ntBASIC3.11□□□□□ -1.91
UPK3BL1B0FP48 RNU6-743P-201ENST00000364151 106 ntBASIC3.11□□□□□ -1.91
UPK3BL1B0FP48 SNORA71.1-201ENST00000364523 117 ntBASIC3.11□□□□□ -1.91
UPK3BL1B0FP48 RNU6-597P-201ENST00000365620 102 ntBASIC3.11□□□□□ -1.91
UPK3BL1B0FP48 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC3.11□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 140.6 ms