RNA–Protein interactions for RNA: ENST00000365690.4

MIR539-201, microRNA 539, humanhuman

BASIC

Gene MIR539, Length 78 nt, Biotype miRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MIR539-201ENST00000365690 AEBP2Q6ZN18 517 aaPredicted RBP16.38■□□□□ 0.21
MIR539-201ENST00000365690 CHIC1Q5VXU3 224 aa15.11■□□□□ 0.01
MIR539-201ENST00000365690 SENP3Q9H4L4 574 aaPredicted RBP13.87□□□□□ -0.19
MIR539-201ENST00000365690 PHF23Q9BUL5 403 aaPredicted RBP13.71□□□□□ -0.21
MIR539-201ENST00000365690 FOXD1Q16676 465 aa13.09□□□□□ -0.31
MIR539-201ENST00000365690 POTEDQ86YR6 584 aa12.82□□□□□ -0.36
MIR539-201ENST00000365690 MSH5O43196 834 aa12.28□□□□□ -0.44
MIR539-201ENST00000365690 PIAS4Q8N2W9 510 aaPredicted RBP12.04□□□□□ -0.48
MIR539-201ENST00000365690 PPP6R1Q9UPN7 881 aa11.97□□□□□ -0.49
MIR539-201ENST00000365690 ADRA2BP18089 450 aa11.85□□□□□ -0.51
MIR539-201ENST00000365690 PLPPR3Q6T4P5 718 aa11.76□□□□□ -0.53
MIR539-201ENST00000365690 MAPK8IP2Q13387 824 aaPredicted RBP11.05□□□□□ -0.64
MIR539-201ENST00000365690 DMRT2Q9Y5R5 561 aa10.99□□□□□ -0.65
MIR539-201ENST00000365690 CACNB1Q02641 598 aaPredicted RBP10.81□□□□□ -0.68
MIR539-201ENST00000365690 SCAF1Q9H7N4 1312 aaKnown RBP10.67□□□□□ -0.7
MIR539-201ENST00000365690 RNF39Q9H2S5 420 aa10.53□□□□□ -0.72
MIR539-201ENST00000365690 DCAF8L1A6NGE4 600 aa10.47□□□□□ -0.73
MIR539-201ENST00000365690 HOXD11P31277 338 aaPredicted RBP10.43□□□□□ -0.74
MIR539-201ENST00000365690 PPP4R3CPQ6ZMV5 832 aa10.3□□□□□ -0.76
MIR539-201ENST00000365690 C1QBPQ07021 282 aaKnown RBP10.28□□□□□ -0.76
MIR539-201ENST00000365690 RNF216Q9NWF9 866 aaPredicted RBP10.2□□□□□ -0.78
MIR539-201ENST00000365690 CNKSR2Q8WXI2 1034 aa10.16□□□□□ -0.78
MIR539-201ENST00000365690 DNAJC5BQ9UF47 199 aa10.1□□□□□ -0.79
MIR539-201ENST00000365690 POTEHQ6S545 545 aa9.92□□□□□ -0.82
MIR539-201ENST00000365690 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.85□□□□□ -0.83
MIR539-201ENST00000365690 DSG3P32926 999 aa9.72□□□□□ -0.85
MIR539-201ENST00000365690 SPINK5Q9NQ38 1064 aaPredicted RBP9.7□□□□□ -0.86
MIR539-201ENST00000365690 U3KPZ7 1027 aaPredicted RBP9.7□□□□□ -0.86
MIR539-201ENST00000365690 NPM3O75607 178 aaKnown RBP9.66□□□□□ -0.86
MIR539-201ENST00000365690 NCBP3Q53F19 620 aaKnown RBP9.66□□□□□ -0.86
MIR539-201ENST00000365690 CAPN15O75808 1086 aa9.59□□□□□ -0.87
MIR539-201ENST00000365690 SLC4A2P04920 1241 aa9.4□□□□□ -0.9
MIR539-201ENST00000365690 ABCB7O75027 752 aa9.39□□□□□ -0.91
MIR539-201ENST00000365690 TRHP20396 242 aaPredicted RBP9.35□□□□□ -0.91
MIR539-201ENST00000365690 ZNF219Q9P2Y4 722 aaPredicted RBP9.27□□□□□ -0.93
MIR539-201ENST00000365690 CHRDL2Q6WN34 429 aa9.2□□□□□ -0.94
MIR539-201ENST00000365690 APLP2Q06481 763 aa9.16□□□□□ -0.94
MIR539-201ENST00000365690 RBM42Q9BTD8 480 aaKnown RBP9.15□□□□□ -0.94
MIR539-201ENST00000365690 KCNA4P22459 653 aa9.12□□□□□ -0.95
MIR539-201ENST00000365690 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.1□□□□□ -0.95
MIR539-201ENST00000365690 HNRNPUL2Q1KMD3 747 aaKnown RBP9.1□□□□□ -0.95
MIR539-201ENST00000365690 SP7Q8TDD2 431 aaPredicted RBP9.09□□□□□ -0.95
MIR539-201ENST00000365690 SAMD1Q6SPF0 538 aaPredicted RBP9.08□□□□□ -0.96
MIR539-201ENST00000365690 POLA2Q14181 598 aa9.03□□□□□ -0.96
MIR539-201ENST00000365690 PIP4P2Q8N4L2 257 aa8.93□□□□□ -0.98
MIR539-201ENST00000365690 AKT1S1Q96B36 256 aa8.91□□□□□ -0.98
MIR539-201ENST00000365690 REM2Q8IYK8 340 aaPredicted RBP8.88□□□□□ -0.99
MIR539-201ENST00000365690 MYCNP04198 464 aaPredicted RBP8.87□□□□□ -0.99
MIR539-201ENST00000365690 ATF5Q9Y2D1 282 aaPredicted RBP8.85□□□□□ -0.99
MIR539-201ENST00000365690 EVX2Q03828 476 aa8.84□□□□□ -0.99
MIR539-201ENST00000365690 FXR2P51116 673 aaKnown RBP eCLIP8.82□□□□□ -1
MIR539-201ENST00000365690 HAX1O00165 279 aa8.81□□□□□ -1
MIR539-201ENST00000365690 PITPNM1O00562 1244 aa8.8□□□□□ -1
MIR539-201ENST00000365690 OSCARQ8IYS5 282 aa8.78□□□□□ -1
MIR539-201ENST00000365690 ZBTB12Q9Y330 459 aaPredicted RBP8.7□□□□□ -1.02
MIR539-201ENST00000365690 FOXD4L1Q9NU39 408 aa8.57□□□□□ -1.04
MIR539-201ENST00000365690 C19orf67A6NJJ6 358 aa8.54□□□□□ -1.04
MIR539-201ENST00000365690 PRKAR2AP13861 404 aaKnown RBP8.53□□□□□ -1.04
MIR539-201ENST00000365690 GABBR2O75899 941 aa8.52□□□□□ -1.05
MIR539-201ENST00000365690 LHX8Q68G74 356 aa8.52□□□□□ -1.05
MIR539-201ENST00000365690 SPDYE2BA6NHP3 402 aa8.47□□□□□ -1.05
MIR539-201ENST00000365690 SPDYE6P0CI01 402 aa8.47□□□□□ -1.05
MIR539-201ENST00000365690 SPDYE2Q495Y8 402 aa8.47□□□□□ -1.05
MIR539-201ENST00000365690 ZBTB22O15209 634 aa8.45□□□□□ -1.06
MIR539-201ENST00000365690 SLC4A1APQ9BWU0 796 aaKnown RBP8.44□□□□□ -1.06
MIR539-201ENST00000365690 POTEIP0CG38 1075 aa8.42□□□□□ -1.06
MIR539-201ENST00000365690 CLEC11AQ9Y240 323 aa8.42□□□□□ -1.06
MIR539-201ENST00000365690 MKRN4PQ13434 485 aaPredicted RBP8.41□□□□□ -1.06
MIR539-201ENST00000365690 SPDYE1Q8NFV5 336 aaPredicted RBP8.4□□□□□ -1.06
MIR539-201ENST00000365690 CHADLQ6NUI6 762 aa8.39□□□□□ -1.07
MIR539-201ENST00000365690 SSUH2Q9Y2M2 353 aa8.38□□□□□ -1.07
MIR539-201ENST00000365690 ATXN8OSP0DMR3 200 aa8.32□□□□□ -1.08
MIR539-201ENST00000365690 FBLN2P98095 1184 aa8.32□□□□□ -1.08
MIR539-201ENST00000365690 ZNF692Q9BU19 519 aaPredicted RBP8.29□□□□□ -1.08
MIR539-201ENST00000365690 PLSCR2Q9NRY7 297 aa8.28□□□□□ -1.08
MIR539-201ENST00000365690 CD44P16070 742 aaKnown RBP8.22□□□□□ -1.09
MIR539-201ENST00000365690 PRR29P0C7W0 189 aa8.21□□□□□ -1.1
MIR539-201ENST00000365690 PABPN1Q86U42 306 aaKnown RBP eCLIP8.19□□□□□ -1.1
MIR539-201ENST00000365690 FARP1Q9Y4F1 1045 aaPredicted RBP8.19□□□□□ -1.1
MIR539-201ENST00000365690 POTEB2H3BUK9 544 aa8.14□□□□□ -1.11
MIR539-201ENST00000365690 OTUD5Q96G74 571 aa8.14□□□□□ -1.11
MIR539-201ENST00000365690 CLCN6P51797 869 aa8.1□□□□□ -1.11
MIR539-201ENST00000365690 ZNF579Q8NAF0 562 aaKnown RBP8.1□□□□□ -1.11
MIR539-201ENST00000365690 DCBLD2Q96PD2 775 aa8.1□□□□□ -1.11
MIR539-201ENST00000365690 GALR2O43603 387 aaPredicted RBP8.07□□□□□ -1.12
MIR539-201ENST00000365690 POTEMA6NI47 508 aa8.04□□□□□ -1.12
MIR539-201ENST00000365690 ZRANB1Q9UGI0 708 aa8.04□□□□□ -1.12
MIR539-201ENST00000365690 PELP1Q8IZL8 1130 aaKnown RBP8.01□□□□□ -1.13
MIR539-201ENST00000365690 CREBZFQ9NS37 354 aa8.01□□□□□ -1.13
MIR539-201ENST00000365690 POTEGQ6S5H5 508 aa8□□□□□ -1.13
MIR539-201ENST00000365690 POTEJP0CG39 1038 aa7.97□□□□□ -1.13
MIR539-201ENST00000365690 LCE2DQ5TA82 110 aaPredicted RBP7.95□□□□□ -1.14
MIR539-201ENST00000365690 PHF12Q96QT6 1004 aa7.95□□□□□ -1.14
MIR539-201ENST00000365690 MNX1P50219 401 aaPredicted RBP7.86□□□□□ -1.15
MIR539-201ENST00000365690 ASTLQ6HA08 431 aaPredicted RBP7.85□□□□□ -1.15
MIR539-201ENST00000365690 PCDH10Q9P2E7 1040 aa7.85□□□□□ -1.15
MIR539-201ENST00000365690 METRNQ9UJH8 293 aa7.84□□□□□ -1.15
MIR539-201ENST00000365690 ATMINO43313 823 aaPredicted RBP7.83□□□□□ -1.16
MIR539-201ENST00000365690 MS4A3Q96HJ5 214 aa7.82□□□□□ -1.16
MIR539-201ENST00000365690 STAG3Q9UJ98 1225 aa7.79□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms