Protein–RNA interactions for Protein: Q9BTN0

LRFN3, Leucine-rich repeat and fibronectin type-III domain-containing protein 3, humanhuman

Predictions only

Length 628 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRFN3Q9BTN0 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC2.83□□□□□ -1.96
LRFN3Q9BTN0 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC2.83□□□□□ -1.96
LRFN3Q9BTN0 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC2.82□□□□□ -1.96
LRFN3Q9BTN0 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC2.82□□□□□ -1.96
LRFN3Q9BTN0 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC2.82□□□□□ -1.96
LRFN3Q9BTN0 MIR30E-201ENST00000362104 92 ntBASIC2.82□□□□□ -1.96
LRFN3Q9BTN0 Y_RNA.179-201ENST00000363844 90 ntBASIC2.82□□□□□ -1.96
LRFN3Q9BTN0 RNU6-944P-201ENST00000364023 107 ntBASIC2.82□□□□□ -1.96
LRFN3Q9BTN0 Y_RNA.304-201ENST00000365011 112 ntBASIC2.82□□□□□ -1.96
LRFN3Q9BTN0 RNU6-793P-201ENST00000384233 104 ntBASIC2.82□□□□□ -1.96
LRFN3Q9BTN0 SNORA12-201ENST00000391162 147 ntBASIC2.82□□□□□ -1.96
LRFN3Q9BTN0 RNU2-32P-201ENST00000411193 191 ntBASIC2.82□□□□□ -1.96
LRFN3Q9BTN0 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC2.82□□□□□ -1.96
LRFN3Q9BTN0 AC004386.2-201ENST00000441858 148 ntBASIC2.82□□□□□ -1.96
LRFN3Q9BTN0 TRAPPC2P7-201ENST00000509650 231 ntBASIC2.82□□□□□ -1.96
LRFN3Q9BTN0 RNU5F-4P-201ENST00000516581 114 ntBASIC2.82□□□□□ -1.96
LRFN3Q9BTN0 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC2.82□□□□□ -1.96
LRFN3Q9BTN0 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC2.82□□□□□ -1.96
LRFN3Q9BTN0 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC2.82□□□□□ -1.96
LRFN3Q9BTN0 AC233702.2-202ENST00000562547 291 ntBASIC2.82□□□□□ -1.96
LRFN3Q9BTN0 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC2.82□□□□□ -1.96
LRFN3Q9BTN0 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC2.82□□□□□ -1.96
LRFN3Q9BTN0 AL365265.1-201ENST00000621045 234 ntBASIC2.82□□□□□ -1.96
LRFN3Q9BTN0 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC2.82□□□□□ -1.96
LRFN3Q9BTN0 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC2.82□□□□□ -1.96
LRFN3Q9BTN0 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC2.82□□□□□ -1.96
LRFN3Q9BTN0 SNORA18.2-201ENST00000383865 132 ntBASIC2.81□□□□□ -1.96
LRFN3Q9BTN0 AL451074.5-201ENST00000415894 435 ntBASIC2.81□□□□□ -1.96
LRFN3Q9BTN0 AC005042.3-201ENST00000453230 174 ntBASIC2.81□□□□□ -1.96
LRFN3Q9BTN0 RPPH1-2P-201ENST00000516688 293 ntBASIC2.81□□□□□ -1.96
LRFN3Q9BTN0 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC2.81□□□□□ -1.96
LRFN3Q9BTN0 AC108706.1-201ENST00000611053 297 ntBASIC2.81□□□□□ -1.96
LRFN3Q9BTN0 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC2.81□□□□□ -1.96
LRFN3Q9BTN0 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
LRFN3Q9BTN0 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
LRFN3Q9BTN0 SNORA38-201ENST00000363946 132 ntBASIC2.8□□□□□ -1.96
LRFN3Q9BTN0 Y_RNA.262-201ENST00000364641 102 ntBASIC2.8□□□□□ -1.96
LRFN3Q9BTN0 RNA5SP125-201ENST00000364843 120 ntBASIC2.8□□□□□ -1.96
LRFN3Q9BTN0 RNU6-234P-201ENST00000365229 104 ntBASIC2.8□□□□□ -1.96
LRFN3Q9BTN0 RNU6-81P-201ENST00000365608 104 ntBASIC2.8□□□□□ -1.96
LRFN3Q9BTN0 Y_RNA.441-201ENST00000384123 112 ntBASIC2.8□□□□□ -1.96
LRFN3Q9BTN0 MIR518E-201ENST00000385252 88 ntBASIC2.8□□□□□ -1.96
LRFN3Q9BTN0 RNA5SP492-201ENST00000411330 114 ntBASIC2.8□□□□□ -1.96
LRFN3Q9BTN0 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC2.8□□□□□ -1.96
LRFN3Q9BTN0 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC2.8□□□□□ -1.96
LRFN3Q9BTN0 AC024067.1-201ENST00000426199 223 ntBASIC2.8□□□□□ -1.96
LRFN3Q9BTN0 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC2.8□□□□□ -1.96
LRFN3Q9BTN0 AL356320.1-201ENST00000429616 163 ntBASIC2.8□□□□□ -1.96
LRFN3Q9BTN0 AC068657.1-201ENST00000520807 306 ntBASIC2.8□□□□□ -1.96
LRFN3Q9BTN0 AP005660.1-201ENST00000522972 293 ntBASIC2.8□□□□□ -1.96
LRFN3Q9BTN0 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC2.8□□□□□ -1.96
LRFN3Q9BTN0 AP001485.1-201ENST00000604799 199 ntBASIC2.8□□□□□ -1.96
LRFN3Q9BTN0 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC2.79□□□□□ -1.96
LRFN3Q9BTN0 MTND5P35-201ENST00000557537 1720 ntBASIC2.79□□□□□ -1.96
LRFN3Q9BTN0 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC2.79□□□□□ -1.96
LRFN3Q9BTN0 Y_RNA.101-201ENST00000363154 102 ntBASIC2.79□□□□□ -1.96
LRFN3Q9BTN0 RNU6-211P-201ENST00000384047 107 ntBASIC2.79□□□□□ -1.96
LRFN3Q9BTN0 MIR499A-201ENST00000384903 122 ntBASIC2.79□□□□□ -1.96
LRFN3Q9BTN0 MIR300-201ENST00000401138 83 ntBASIC2.79□□□□□ -1.96
LRFN3Q9BTN0 AL357139.1-201ENST00000407792 426 ntBASIC2.79□□□□□ -1.96
LRFN3Q9BTN0 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC2.79□□□□□ -1.96
LRFN3Q9BTN0 AC011753.1-201ENST00000451001 220 ntBASIC2.79□□□□□ -1.96
LRFN3Q9BTN0 RNU6-625P-201ENST00000459412 107 ntBASIC2.79□□□□□ -1.96
LRFN3Q9BTN0 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC2.79□□□□□ -1.96
LRFN3Q9BTN0 AC074133.1-201ENST00000515696 183 ntBASIC2.79□□□□□ -1.96
LRFN3Q9BTN0 RNU6-191P-201ENST00000516295 94 ntBASIC2.79□□□□□ -1.96
LRFN3Q9BTN0 RNU4ATAC3P-201ENST00000516699 126 ntBASIC2.79□□□□□ -1.96
LRFN3Q9BTN0 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC2.79□□□□□ -1.96
LRFN3Q9BTN0 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC2.79□□□□□ -1.96
LRFN3Q9BTN0 AC018448.1-201ENST00000552843 316 ntBASIC2.79□□□□□ -1.96
LRFN3Q9BTN0 AC023043.3-201ENST00000593113 385 ntBASIC2.79□□□□□ -1.96
LRFN3Q9BTN0 SNORD11B-201ENST00000607707 90 ntBASIC2.79□□□□□ -1.96
LRFN3Q9BTN0 snoU18.1-201ENST00000629629 71 ntBASIC2.79□□□□□ -1.96
LRFN3Q9BTN0 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC2.78□□□□□ -1.96
LRFN3Q9BTN0 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC2.78□□□□□ -1.96
LRFN3Q9BTN0 RNU6-653P-201ENST00000363074 106 ntBASIC2.78□□□□□ -1.96
LRFN3Q9BTN0 RNU4-80P-201ENST00000363200 141 ntBASIC2.78□□□□□ -1.96
LRFN3Q9BTN0 SNORA72.2-201ENST00000365028 127 ntBASIC2.78□□□□□ -1.96
LRFN3Q9BTN0 RNU6-1081P-201ENST00000384537 107 ntBASIC2.78□□□□□ -1.96
LRFN3Q9BTN0 AC009238.1-201ENST00000442165 424 ntBASIC2.78□□□□□ -1.96
LRFN3Q9BTN0 AC009237.6-201ENST00000446969 424 ntBASIC2.78□□□□□ -1.96
LRFN3Q9BTN0 AC074290.1-201ENST00000448883 135 ntBASIC2.78□□□□□ -1.96
LRFN3Q9BTN0 MIR5692C2-201ENST00000577959 77 ntBASIC2.78□□□□□ -1.96
LRFN3Q9BTN0 MIR3145-201ENST00000580727 82 ntBASIC2.78□□□□□ -1.96
LRFN3Q9BTN0 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC2.78□□□□□ -1.96
LRFN3Q9BTN0 AC004467.1-201ENST00000615678 330 ntBASIC2.78□□□□□ -1.96
LRFN3Q9BTN0 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
LRFN3Q9BTN0 Y_RNA.116-201ENST00000363292 103 ntBASIC2.77□□□□□ -1.97
LRFN3Q9BTN0 Y_RNA.498-201ENST00000384460 102 ntBASIC2.77□□□□□ -1.97
LRFN3Q9BTN0 MIR549A-201ENST00000385268 96 ntBASIC2.77□□□□□ -1.97
LRFN3Q9BTN0 RN7SKP123-201ENST00000410732 291 ntBASIC2.77□□□□□ -1.97
LRFN3Q9BTN0 RNU5E-9P-201ENST00000411164 104 ntBASIC2.77□□□□□ -1.97
LRFN3Q9BTN0 RNU6-1199P-201ENST00000411249 104 ntBASIC2.77□□□□□ -1.97
LRFN3Q9BTN0 ELOCP21-201ENST00000412558 336 ntBASIC2.77□□□□□ -1.97
LRFN3Q9BTN0 RAB28P5-201ENST00000427490 651 ntBASIC2.77□□□□□ -1.97
LRFN3Q9BTN0 RNU7-14P-201ENST00000459331 62 ntBASIC2.77□□□□□ -1.97
LRFN3Q9BTN0 RPL23AP42-201ENST00000471152 471 ntBASIC2.77□□□□□ -1.97
LRFN3Q9BTN0 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC2.77□□□□□ -1.97
LRFN3Q9BTN0 HMGB3P3-201ENST00000510526 400 ntBASIC2.77□□□□□ -1.97
LRFN3Q9BTN0 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 171.3 ms