Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC19.71■□□□□ 0.75
LIMD1Q9UGP4 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
LIMD1Q9UGP4 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
LIMD1Q9UGP4 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
LIMD1Q9UGP4 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC19.71■□□□□ 0.75
LIMD1Q9UGP4 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
LIMD1Q9UGP4 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC19.71■□□□□ 0.75
LIMD1Q9UGP4 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
LIMD1Q9UGP4 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
LIMD1Q9UGP4 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC19.71■□□□□ 0.75
LIMD1Q9UGP4 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC19.71■□□□□ 0.75
LIMD1Q9UGP4 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC19.71■□□□□ 0.75
LIMD1Q9UGP4 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC19.71■□□□□ 0.75
LIMD1Q9UGP4 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC19.71■□□□□ 0.75
LIMD1Q9UGP4 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
LIMD1Q9UGP4 IFNL4P1-201ENST00000607083 540 ntBASIC19.71■□□□□ 0.75
LIMD1Q9UGP4 AC024243.1-201ENST00000609234 778 ntBASIC19.71■□□□□ 0.75
LIMD1Q9UGP4 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
LIMD1Q9UGP4 GXYLT1P4-201ENST00000613576 1192 ntBASIC19.71■□□□□ 0.75
LIMD1Q9UGP4 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
LIMD1Q9UGP4 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC19.71■□□□□ 0.75
LIMD1Q9UGP4 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC19.71■□□□□ 0.75
LIMD1Q9UGP4 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
LIMD1Q9UGP4 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
LIMD1Q9UGP4 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC19.71■□□□□ 0.75
LIMD1Q9UGP4 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC19.71■□□□□ 0.75
LIMD1Q9UGP4 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
LIMD1Q9UGP4 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
LIMD1Q9UGP4 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
LIMD1Q9UGP4 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
LIMD1Q9UGP4 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
LIMD1Q9UGP4 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
LIMD1Q9UGP4 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC19.7■□□□□ 0.74
LIMD1Q9UGP4 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC19.7■□□□□ 0.74
LIMD1Q9UGP4 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
LIMD1Q9UGP4 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
LIMD1Q9UGP4 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
LIMD1Q9UGP4 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
LIMD1Q9UGP4 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC19.7■□□□□ 0.74
LIMD1Q9UGP4 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC19.7■□□□□ 0.74
LIMD1Q9UGP4 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC19.7■□□□□ 0.74
LIMD1Q9UGP4 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC19.7■□□□□ 0.74
LIMD1Q9UGP4 IL11-204ENST00000590625 1028 ntTSL 2 BASIC19.7■□□□□ 0.74
LIMD1Q9UGP4 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC19.7■□□□□ 0.74
LIMD1Q9UGP4 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
LIMD1Q9UGP4 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
LIMD1Q9UGP4 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
LIMD1Q9UGP4 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
LIMD1Q9UGP4 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC19.7■□□□□ 0.74
LIMD1Q9UGP4 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC19.7■□□□□ 0.74
LIMD1Q9UGP4 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC19.7■□□□□ 0.74
LIMD1Q9UGP4 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
LIMD1Q9UGP4 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC19.7■□□□□ 0.74
LIMD1Q9UGP4 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
LIMD1Q9UGP4 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
LIMD1Q9UGP4 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC19.7■□□□□ 0.74
LIMD1Q9UGP4 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
LIMD1Q9UGP4 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC19.7■□□□□ 0.74
LIMD1Q9UGP4 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
LIMD1Q9UGP4 GOLGA2P11-201ENST00000562660 1621 ntBASIC19.69■□□□□ 0.74
LIMD1Q9UGP4 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
LIMD1Q9UGP4 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
LIMD1Q9UGP4 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
LIMD1Q9UGP4 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC19.69■□□□□ 0.74
LIMD1Q9UGP4 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
LIMD1Q9UGP4 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC19.69■□□□□ 0.74
LIMD1Q9UGP4 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
LIMD1Q9UGP4 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC19.69■□□□□ 0.74
LIMD1Q9UGP4 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC19.69■□□□□ 0.74
LIMD1Q9UGP4 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
LIMD1Q9UGP4 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
LIMD1Q9UGP4 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC19.69■□□□□ 0.74
LIMD1Q9UGP4 AC006538.3-201ENST00000612495 578 ntBASIC19.69■□□□□ 0.74
LIMD1Q9UGP4 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC19.69■□□□□ 0.74
LIMD1Q9UGP4 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
LIMD1Q9UGP4 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC19.69■□□□□ 0.74
LIMD1Q9UGP4 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
LIMD1Q9UGP4 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
LIMD1Q9UGP4 ANKRD18DP-204ENST00000455355 1975 ntBASIC19.68■□□□□ 0.74
LIMD1Q9UGP4 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC19.68■□□□□ 0.74
LIMD1Q9UGP4 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC19.68■□□□□ 0.74
LIMD1Q9UGP4 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
LIMD1Q9UGP4 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
LIMD1Q9UGP4 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
LIMD1Q9UGP4 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
LIMD1Q9UGP4 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC19.68■□□□□ 0.74
LIMD1Q9UGP4 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
LIMD1Q9UGP4 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
LIMD1Q9UGP4 AL022342.1-201ENST00000400363 863 ntBASIC19.68■□□□□ 0.74
LIMD1Q9UGP4 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC19.68■□□□□ 0.74
LIMD1Q9UGP4 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
LIMD1Q9UGP4 KRT8P26-201ENST00000534154 1276 ntBASIC19.68■□□□□ 0.74
LIMD1Q9UGP4 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
LIMD1Q9UGP4 AL732292.2-201ENST00000609649 430 ntBASIC19.68■□□□□ 0.74
LIMD1Q9UGP4 AC023511.2-201ENST00000618803 211 ntBASIC19.68■□□□□ 0.74
LIMD1Q9UGP4 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC19.68■□□□□ 0.74
LIMD1Q9UGP4 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
LIMD1Q9UGP4 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
LIMD1Q9UGP4 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
LIMD1Q9UGP4 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms