Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
VCX3AQ9NNX9 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VCX3AQ9NNX9 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VCX3AQ9NNX9 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VCX3AQ9NNX9 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VCX3AQ9NNX9 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
VCX3AQ9NNX9 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VCX3AQ9NNX9 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
VCX3AQ9NNX9 AC012354.3-201ENST00000623734 483 ntBASIC17.69■□□□□ 0.42
VCX3AQ9NNX9 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VCX3AQ9NNX9 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC17.69■□□□□ 0.42
VCX3AQ9NNX9 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VCX3AQ9NNX9 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VCX3AQ9NNX9 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
VCX3AQ9NNX9 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VCX3AQ9NNX9 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
VCX3AQ9NNX9 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VCX3AQ9NNX9 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
VCX3AQ9NNX9 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC17.69■□□□□ 0.42
VCX3AQ9NNX9 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
VCX3AQ9NNX9 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC17.69■□□□□ 0.42
VCX3AQ9NNX9 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
VCX3AQ9NNX9 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
VCX3AQ9NNX9 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC17.69■□□□□ 0.42
VCX3AQ9NNX9 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
VCX3AQ9NNX9 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
VCX3AQ9NNX9 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
VCX3AQ9NNX9 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC17.68■□□□□ 0.42
VCX3AQ9NNX9 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC17.68■□□□□ 0.42
VCX3AQ9NNX9 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
VCX3AQ9NNX9 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
VCX3AQ9NNX9 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC17.68■□□□□ 0.42
VCX3AQ9NNX9 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
VCX3AQ9NNX9 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VCX3AQ9NNX9 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
VCX3AQ9NNX9 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VCX3AQ9NNX9 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VCX3AQ9NNX9 MFF-208ENST00000409616 1247 ntTSL 5 BASIC17.68■□□□□ 0.42
VCX3AQ9NNX9 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC17.68■□□□□ 0.42
VCX3AQ9NNX9 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC17.68■□□□□ 0.42
VCX3AQ9NNX9 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC17.68■□□□□ 0.42
VCX3AQ9NNX9 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC17.68■□□□□ 0.42
VCX3AQ9NNX9 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VCX3AQ9NNX9 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
VCX3AQ9NNX9 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
VCX3AQ9NNX9 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC17.68■□□□□ 0.42
VCX3AQ9NNX9 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
VCX3AQ9NNX9 OR4D1-202ENST00000641449 4925 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
VCX3AQ9NNX9 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
VCX3AQ9NNX9 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC17.68■□□□□ 0.42
VCX3AQ9NNX9 FP475955.4-201ENST00000623131 1990 ntBASIC17.68■□□□□ 0.42
VCX3AQ9NNX9 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VCX3AQ9NNX9 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
VCX3AQ9NNX9 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
VCX3AQ9NNX9 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC17.67■□□□□ 0.42
VCX3AQ9NNX9 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VCX3AQ9NNX9 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VCX3AQ9NNX9 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
VCX3AQ9NNX9 SNAI3-AS1-205ENST00000568633 2096 ntBASIC17.67■□□□□ 0.42
VCX3AQ9NNX9 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC17.67■□□□□ 0.42
VCX3AQ9NNX9 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC17.67■□□□□ 0.42
VCX3AQ9NNX9 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VCX3AQ9NNX9 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VCX3AQ9NNX9 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC17.67■□□□□ 0.42
VCX3AQ9NNX9 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
VCX3AQ9NNX9 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
VCX3AQ9NNX9 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
VCX3AQ9NNX9 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
VCX3AQ9NNX9 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VCX3AQ9NNX9 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC17.67■□□□□ 0.42
VCX3AQ9NNX9 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
VCX3AQ9NNX9 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC17.67■□□□□ 0.42
VCX3AQ9NNX9 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
VCX3AQ9NNX9 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VCX3AQ9NNX9 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
VCX3AQ9NNX9 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
VCX3AQ9NNX9 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC17.67■□□□□ 0.42
VCX3AQ9NNX9 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VCX3AQ9NNX9 TEX21P-204ENST00000641479 1693 ntBASIC17.67■□□□□ 0.42
VCX3AQ9NNX9 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VCX3AQ9NNX9 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
VCX3AQ9NNX9 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VCX3AQ9NNX9 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VCX3AQ9NNX9 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
VCX3AQ9NNX9 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC17.66■□□□□ 0.42
VCX3AQ9NNX9 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC17.66■□□□□ 0.42
VCX3AQ9NNX9 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VCX3AQ9NNX9 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VCX3AQ9NNX9 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC17.66■□□□□ 0.42
VCX3AQ9NNX9 AL512353.2-201ENST00000448759 1962 ntBASIC17.66■□□□□ 0.42
VCX3AQ9NNX9 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
VCX3AQ9NNX9 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VCX3AQ9NNX9 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
VCX3AQ9NNX9 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VCX3AQ9NNX9 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
VCX3AQ9NNX9 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC17.66■□□□□ 0.42
VCX3AQ9NNX9 AC007322.3-201ENST00000426526 701 ntBASIC17.66■□□□□ 0.42
VCX3AQ9NNX9 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
VCX3AQ9NNX9 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC17.66■□□□□ 0.42
VCX3AQ9NNX9 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms