Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
USP42Q9H9J4 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
USP42Q9H9J4 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC24.05■■□□□ 1.44
USP42Q9H9J4 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC24.05■■□□□ 1.44
USP42Q9H9J4 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
USP42Q9H9J4 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC24.05■■□□□ 1.44
USP42Q9H9J4 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
USP42Q9H9J4 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC24.05■■□□□ 1.44
USP42Q9H9J4 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC24.05■■□□□ 1.44
USP42Q9H9J4 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
USP42Q9H9J4 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC24.05■■□□□ 1.44
USP42Q9H9J4 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC24.05■■□□□ 1.44
USP42Q9H9J4 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC24.05■■□□□ 1.44
USP42Q9H9J4 AL162741.1-201ENST00000565563 1558 ntBASIC24.05■■□□□ 1.44
USP42Q9H9J4 AC079602.3-201ENST00000623931 403 ntBASIC24.05■■□□□ 1.44
USP42Q9H9J4 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC24.04■■□□□ 1.44
USP42Q9H9J4 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC24.04■■□□□ 1.44
USP42Q9H9J4 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC24.04■■□□□ 1.44
USP42Q9H9J4 AC093525.10-201ENST00000625130 1569 ntBASIC24.04■■□□□ 1.44
USP42Q9H9J4 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
USP42Q9H9J4 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
USP42Q9H9J4 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC24.04■■□□□ 1.44
USP42Q9H9J4 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC24.04■■□□□ 1.44
USP42Q9H9J4 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC24.04■■□□□ 1.44
USP42Q9H9J4 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
USP42Q9H9J4 NUS1P1-201ENST00000446295 882 ntBASIC24.04■■□□□ 1.44
USP42Q9H9J4 IFNL4P1-201ENST00000607083 540 ntBASIC24.04■■□□□ 1.44
USP42Q9H9J4 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
USP42Q9H9J4 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
USP42Q9H9J4 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC24.04■■□□□ 1.44
USP42Q9H9J4 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC24.03■■□□□ 1.44
USP42Q9H9J4 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC24.03■■□□□ 1.44
USP42Q9H9J4 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
USP42Q9H9J4 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC24.03■■□□□ 1.44
USP42Q9H9J4 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC24.03■■□□□ 1.44
USP42Q9H9J4 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
USP42Q9H9J4 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
USP42Q9H9J4 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC24.03■■□□□ 1.44
USP42Q9H9J4 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC24.03■■□□□ 1.44
USP42Q9H9J4 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
USP42Q9H9J4 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
USP42Q9H9J4 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC24.03■■□□□ 1.44
USP42Q9H9J4 KRT8P26-201ENST00000534154 1276 ntBASIC24.03■■□□□ 1.44
USP42Q9H9J4 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC24.03■■□□□ 1.44
USP42Q9H9J4 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC24.03■■□□□ 1.44
USP42Q9H9J4 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC24.03■■□□□ 1.44
USP42Q9H9J4 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
USP42Q9H9J4 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
USP42Q9H9J4 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
USP42Q9H9J4 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC24.02■■□□□ 1.44
USP42Q9H9J4 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
USP42Q9H9J4 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC24.02■■□□□ 1.44
USP42Q9H9J4 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
USP42Q9H9J4 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC24.02■■□□□ 1.44
USP42Q9H9J4 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
USP42Q9H9J4 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
USP42Q9H9J4 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC24.02■■□□□ 1.44
USP42Q9H9J4 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
USP42Q9H9J4 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
USP42Q9H9J4 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC24.02■■□□□ 1.44
USP42Q9H9J4 SEC1P-202ENST00000473944 940 ntBASIC24.02■■□□□ 1.44
USP42Q9H9J4 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC24.02■■□□□ 1.44
USP42Q9H9J4 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC24.02■■□□□ 1.44
USP42Q9H9J4 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC24.02■■□□□ 1.44
USP42Q9H9J4 POLI-202ENST00000406285 2030 ntTSL 2 BASIC24.02■■□□□ 1.44
USP42Q9H9J4 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC24.02■■□□□ 1.44
USP42Q9H9J4 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
USP42Q9H9J4 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC24.01■■□□□ 1.43
USP42Q9H9J4 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC24.01■■□□□ 1.43
USP42Q9H9J4 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
USP42Q9H9J4 AL158211.5-201ENST00000623583 2518 ntBASIC24.01■■□□□ 1.43
USP42Q9H9J4 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC24.01■■□□□ 1.43
USP42Q9H9J4 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
USP42Q9H9J4 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
USP42Q9H9J4 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC24.01■■□□□ 1.43
USP42Q9H9J4 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC24.01■■□□□ 1.43
USP42Q9H9J4 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC24.01■■□□□ 1.43
USP42Q9H9J4 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC24.01■■□□□ 1.43
USP42Q9H9J4 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC24.01■■□□□ 1.43
USP42Q9H9J4 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC24.01■■□□□ 1.43
USP42Q9H9J4 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
USP42Q9H9J4 CHCHD2P8-201ENST00000429873 447 ntBASIC24.01■■□□□ 1.43
USP42Q9H9J4 HLA-F-220ENST00000434407 884 ntBASIC24.01■■□□□ 1.43
USP42Q9H9J4 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
USP42Q9H9J4 MPI-205ENST00000562606 1052 ntTSL 3 BASIC24.01■■□□□ 1.43
USP42Q9H9J4 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC24.01■■□□□ 1.43
USP42Q9H9J4 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC24.01■■□□□ 1.43
USP42Q9H9J4 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC24.01■■□□□ 1.43
USP42Q9H9J4 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
USP42Q9H9J4 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
USP42Q9H9J4 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
USP42Q9H9J4 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
USP42Q9H9J4 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC24.01■■□□□ 1.43
USP42Q9H9J4 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC24.01■■□□□ 1.43
USP42Q9H9J4 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC24■■□□□ 1.43
USP42Q9H9J4 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
USP42Q9H9J4 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC24■■□□□ 1.43
USP42Q9H9J4 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC24■■□□□ 1.43
USP42Q9H9J4 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC24■■□□□ 1.43
USP42Q9H9J4 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC24■■□□□ 1.43
Retrieved 100 of 98,524 protein–RNA pairs in 87.5 ms