Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
MMP28Q9H239 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
MMP28Q9H239 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC16.69■□□□□ 0.26
MMP28Q9H239 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC16.69■□□□□ 0.26
MMP28Q9H239 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC16.69■□□□□ 0.26
MMP28Q9H239 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC16.69■□□□□ 0.26
MMP28Q9H239 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC16.69■□□□□ 0.26
MMP28Q9H239 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC16.69■□□□□ 0.26
MMP28Q9H239 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
MMP28Q9H239 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC16.69■□□□□ 0.26
MMP28Q9H239 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
MMP28Q9H239 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC16.69■□□□□ 0.26
MMP28Q9H239 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
MMP28Q9H239 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
MMP28Q9H239 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC16.68■□□□□ 0.26
MMP28Q9H239 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
MMP28Q9H239 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
MMP28Q9H239 AC141586.3-201ENST00000562166 1838 ntBASIC16.68■□□□□ 0.26
MMP28Q9H239 AC008894.3-201ENST00000624324 3103 ntBASIC16.68■□□□□ 0.26
MMP28Q9H239 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC16.68■□□□□ 0.26
MMP28Q9H239 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC16.68■□□□□ 0.26
MMP28Q9H239 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC16.68■□□□□ 0.26
MMP28Q9H239 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC16.68■□□□□ 0.26
MMP28Q9H239 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC16.68■□□□□ 0.26
MMP28Q9H239 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC16.68■□□□□ 0.26
MMP28Q9H239 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC16.68■□□□□ 0.26
MMP28Q9H239 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
MMP28Q9H239 APTR-203ENST00000430801 583 ntTSL 5 BASIC16.68■□□□□ 0.26
MMP28Q9H239 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
MMP28Q9H239 RARRES2P4-201ENST00000514074 484 ntBASIC16.68■□□□□ 0.26
MMP28Q9H239 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC16.68■□□□□ 0.26
MMP28Q9H239 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
MMP28Q9H239 AC005181.1-201ENST00000604782 1256 ntBASIC16.68■□□□□ 0.26
MMP28Q9H239 LINC00896-202ENST00000609602 2128 ntBASIC16.68■□□□□ 0.26
MMP28Q9H239 WT1-AS_3.1-201ENST00000613262 234 ntBASIC16.68■□□□□ 0.26
MMP28Q9H239 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
MMP28Q9H239 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
MMP28Q9H239 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
MMP28Q9H239 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC16.68■□□□□ 0.26
MMP28Q9H239 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
MMP28Q9H239 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC16.68■□□□□ 0.26
MMP28Q9H239 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC16.68■□□□□ 0.26
MMP28Q9H239 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
MMP28Q9H239 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
MMP28Q9H239 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC16.68■□□□□ 0.26
MMP28Q9H239 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
MMP28Q9H239 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
MMP28Q9H239 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
MMP28Q9H239 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC16.67■□□□□ 0.26
MMP28Q9H239 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
MMP28Q9H239 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC16.67■□□□□ 0.26
MMP28Q9H239 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
MMP28Q9H239 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
MMP28Q9H239 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC16.67■□□□□ 0.26
MMP28Q9H239 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
MMP28Q9H239 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC16.67■□□□□ 0.26
MMP28Q9H239 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
MMP28Q9H239 CEP83-AS1-201ENST00000623122 2482 ntBASIC16.67■□□□□ 0.26
MMP28Q9H239 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
MMP28Q9H239 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
MMP28Q9H239 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
MMP28Q9H239 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
MMP28Q9H239 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
MMP28Q9H239 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
MMP28Q9H239 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
MMP28Q9H239 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC16.67■□□□□ 0.26
MMP28Q9H239 PGM5P4-201ENST00000421970 445 ntBASIC16.67■□□□□ 0.26
MMP28Q9H239 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
MMP28Q9H239 NCF1B-203ENST00000435988 1254 ntBASIC16.67■□□□□ 0.26
MMP28Q9H239 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC16.67■□□□□ 0.26
MMP28Q9H239 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC16.67■□□□□ 0.26
MMP28Q9H239 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC16.67■□□□□ 0.26
MMP28Q9H239 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
MMP28Q9H239 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
MMP28Q9H239 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
MMP28Q9H239 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
MMP28Q9H239 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
MMP28Q9H239 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
MMP28Q9H239 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
MMP28Q9H239 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
MMP28Q9H239 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
MMP28Q9H239 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
MMP28Q9H239 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
MMP28Q9H239 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
MMP28Q9H239 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
MMP28Q9H239 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
MMP28Q9H239 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
MMP28Q9H239 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
MMP28Q9H239 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
MMP28Q9H239 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
MMP28Q9H239 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
MMP28Q9H239 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
MMP28Q9H239 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
MMP28Q9H239 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
MMP28Q9H239 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
MMP28Q9H239 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC16.66■□□□□ 0.26
MMP28Q9H239 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
MMP28Q9H239 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
MMP28Q9H239 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC16.66■□□□□ 0.26
MMP28Q9H239 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC16.66■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 16.3 ms