Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 GOLGA6L5P-202ENST00000515341 1828 ntBASIC18.72■□□□□ 0.59
VPS13AQ96RL7 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC18.72■□□□□ 0.59
VPS13AQ96RL7 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC18.72■□□□□ 0.59
VPS13AQ96RL7 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC18.72■□□□□ 0.59
VPS13AQ96RL7 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
VPS13AQ96RL7 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC18.72■□□□□ 0.59
VPS13AQ96RL7 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC18.72■□□□□ 0.59
VPS13AQ96RL7 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC18.72■□□□□ 0.59
VPS13AQ96RL7 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC18.72■□□□□ 0.59
VPS13AQ96RL7 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC18.72■□□□□ 0.59
VPS13AQ96RL7 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
VPS13AQ96RL7 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC18.72■□□□□ 0.59
VPS13AQ96RL7 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
VPS13AQ96RL7 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
VPS13AQ96RL7 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
VPS13AQ96RL7 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
VPS13AQ96RL7 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
VPS13AQ96RL7 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
VPS13AQ96RL7 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
VPS13AQ96RL7 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC18.72■□□□□ 0.59
VPS13AQ96RL7 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
VPS13AQ96RL7 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC18.71■□□□□ 0.59
VPS13AQ96RL7 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
VPS13AQ96RL7 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
VPS13AQ96RL7 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC18.71■□□□□ 0.59
VPS13AQ96RL7 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
VPS13AQ96RL7 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
VPS13AQ96RL7 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
VPS13AQ96RL7 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
VPS13AQ96RL7 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
VPS13AQ96RL7 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
VPS13AQ96RL7 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC18.71■□□□□ 0.59
VPS13AQ96RL7 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
VPS13AQ96RL7 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
VPS13AQ96RL7 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
VPS13AQ96RL7 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
VPS13AQ96RL7 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC18.71■□□□□ 0.59
VPS13AQ96RL7 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC18.71■□□□□ 0.59
VPS13AQ96RL7 MIR3917-201ENST00000580971 93 ntBASIC18.71■□□□□ 0.59
VPS13AQ96RL7 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC18.71■□□□□ 0.59
VPS13AQ96RL7 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
VPS13AQ96RL7 TREX1-205ENST00000625293 1783 ntBASIC18.71■□□□□ 0.59
VPS13AQ96RL7 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
VPS13AQ96RL7 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
VPS13AQ96RL7 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
VPS13AQ96RL7 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.58
VPS13AQ96RL7 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.58
VPS13AQ96RL7 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.58
VPS13AQ96RL7 IMP4-203ENST00000409935 958 ntTSL 5 BASIC18.71■□□□□ 0.58
VPS13AQ96RL7 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC18.71■□□□□ 0.58
VPS13AQ96RL7 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
VPS13AQ96RL7 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
VPS13AQ96RL7 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
VPS13AQ96RL7 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VPS13AQ96RL7 AF186996.4-201ENST00000467186 377 ntBASIC18.7■□□□□ 0.58
VPS13AQ96RL7 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC18.7■□□□□ 0.58
VPS13AQ96RL7 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC18.7■□□□□ 0.58
VPS13AQ96RL7 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VPS13AQ96RL7 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC18.7■□□□□ 0.58
VPS13AQ96RL7 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VPS13AQ96RL7 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
VPS13AQ96RL7 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VPS13AQ96RL7 UPF3AP3-201ENST00000420996 769 ntBASIC18.7■□□□□ 0.58
VPS13AQ96RL7 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC18.7■□□□□ 0.58
VPS13AQ96RL7 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
VPS13AQ96RL7 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC18.7■□□□□ 0.58
VPS13AQ96RL7 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
VPS13AQ96RL7 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VPS13AQ96RL7 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VPS13AQ96RL7 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
VPS13AQ96RL7 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC18.69■□□□□ 0.58
VPS13AQ96RL7 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
VPS13AQ96RL7 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
VPS13AQ96RL7 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC18.69■□□□□ 0.58
VPS13AQ96RL7 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC18.69■□□□□ 0.58
VPS13AQ96RL7 DNAJB3-202ENST00000449667 1266 ntBASIC18.69■□□□□ 0.58
VPS13AQ96RL7 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC18.69■□□□□ 0.58
VPS13AQ96RL7 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC18.69■□□□□ 0.58
VPS13AQ96RL7 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC18.69■□□□□ 0.58
VPS13AQ96RL7 AL049840.3-201ENST00000602669 611 ntBASIC18.69■□□□□ 0.58
VPS13AQ96RL7 AC104417.2-201ENST00000562989 1793 ntBASIC18.69■□□□□ 0.58
VPS13AQ96RL7 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VPS13AQ96RL7 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VPS13AQ96RL7 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VPS13AQ96RL7 HNRNPDP1-201ENST00000439535 754 ntBASIC18.69■□□□□ 0.58
VPS13AQ96RL7 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
VPS13AQ96RL7 SART3-203ENST00000546611 1184 ntBASIC18.69■□□□□ 0.58
VPS13AQ96RL7 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC18.69■□□□□ 0.58
VPS13AQ96RL7 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC18.69■□□□□ 0.58
VPS13AQ96RL7 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC18.69■□□□□ 0.58
VPS13AQ96RL7 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VPS13AQ96RL7 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
VPS13AQ96RL7 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC18.68■□□□□ 0.58
VPS13AQ96RL7 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
VPS13AQ96RL7 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
VPS13AQ96RL7 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
VPS13AQ96RL7 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VPS13AQ96RL7 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC18.68■□□□□ 0.58
VPS13AQ96RL7 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC18.68■□□□□ 0.58
VPS13AQ96RL7 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms