Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CLIP3Q96DZ5 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC18.23■□□□□ 0.51
CLIP3Q96DZ5 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CLIP3Q96DZ5 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CLIP3Q96DZ5 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
CLIP3Q96DZ5 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CLIP3Q96DZ5 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CLIP3Q96DZ5 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CLIP3Q96DZ5 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CLIP3Q96DZ5 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CLIP3Q96DZ5 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC18.23■□□□□ 0.51
CLIP3Q96DZ5 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC18.23■□□□□ 0.51
CLIP3Q96DZ5 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC18.23■□□□□ 0.51
CLIP3Q96DZ5 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC18.23■□□□□ 0.51
CLIP3Q96DZ5 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
CLIP3Q96DZ5 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
CLIP3Q96DZ5 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CLIP3Q96DZ5 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CLIP3Q96DZ5 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CLIP3Q96DZ5 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CLIP3Q96DZ5 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC18.23■□□□□ 0.51
CLIP3Q96DZ5 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CLIP3Q96DZ5 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC18.23■□□□□ 0.51
CLIP3Q96DZ5 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CLIP3Q96DZ5 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
CLIP3Q96DZ5 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
CLIP3Q96DZ5 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CLIP3Q96DZ5 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
CLIP3Q96DZ5 KRT8P41-201ENST00000533985 1514 ntBASIC18.23■□□□□ 0.51
CLIP3Q96DZ5 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
CLIP3Q96DZ5 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CLIP3Q96DZ5 AC073508.3-201ENST00000619697 1419 ntBASIC18.23■□□□□ 0.51
CLIP3Q96DZ5 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CLIP3Q96DZ5 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC18.22■□□□□ 0.51
CLIP3Q96DZ5 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC18.22■□□□□ 0.51
CLIP3Q96DZ5 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CLIP3Q96DZ5 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC18.22■□□□□ 0.51
CLIP3Q96DZ5 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC18.22■□□□□ 0.51
CLIP3Q96DZ5 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC18.22■□□□□ 0.51
CLIP3Q96DZ5 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CLIP3Q96DZ5 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
CLIP3Q96DZ5 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC18.22■□□□□ 0.51
CLIP3Q96DZ5 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CLIP3Q96DZ5 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC18.22■□□□□ 0.51
CLIP3Q96DZ5 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC18.22■□□□□ 0.51
CLIP3Q96DZ5 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC18.22■□□□□ 0.51
CLIP3Q96DZ5 HMGA1P5-201ENST00000412453 271 ntBASIC18.22■□□□□ 0.51
CLIP3Q96DZ5 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC18.22■□□□□ 0.51
CLIP3Q96DZ5 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC18.22■□□□□ 0.51
CLIP3Q96DZ5 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC18.22■□□□□ 0.51
CLIP3Q96DZ5 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC18.22■□□□□ 0.51
CLIP3Q96DZ5 GPX4-207ENST00000589115 812 ntTSL 2 BASIC18.22■□□□□ 0.51
CLIP3Q96DZ5 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC18.22■□□□□ 0.51
CLIP3Q96DZ5 AL445228.2-201ENST00000605589 952 ntBASIC18.22■□□□□ 0.51
CLIP3Q96DZ5 FAM87A-204ENST00000613235 858 ntBASIC18.22■□□□□ 0.51
CLIP3Q96DZ5 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CLIP3Q96DZ5 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC18.22■□□□□ 0.51
CLIP3Q96DZ5 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CLIP3Q96DZ5 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
CLIP3Q96DZ5 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CLIP3Q96DZ5 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CLIP3Q96DZ5 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
CLIP3Q96DZ5 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CLIP3Q96DZ5 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CLIP3Q96DZ5 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
CLIP3Q96DZ5 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CLIP3Q96DZ5 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CLIP3Q96DZ5 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC18.21■□□□□ 0.51
CLIP3Q96DZ5 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CLIP3Q96DZ5 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC18.21■□□□□ 0.51
CLIP3Q96DZ5 ARMC10P1-201ENST00000313754 855 ntBASIC18.21■□□□□ 0.51
CLIP3Q96DZ5 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC18.21■□□□□ 0.51
CLIP3Q96DZ5 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC18.21■□□□□ 0.51
CLIP3Q96DZ5 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC18.21■□□□□ 0.51
CLIP3Q96DZ5 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC18.21■□□□□ 0.51
CLIP3Q96DZ5 KRT18P35-201ENST00000510488 1269 ntBASIC18.21■□□□□ 0.51
CLIP3Q96DZ5 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC18.21■□□□□ 0.51
CLIP3Q96DZ5 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC18.21■□□□□ 0.51
CLIP3Q96DZ5 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CLIP3Q96DZ5 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CLIP3Q96DZ5 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
CLIP3Q96DZ5 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
CLIP3Q96DZ5 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CLIP3Q96DZ5 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC18.21■□□□□ 0.51
CLIP3Q96DZ5 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC18.21■□□□□ 0.51
CLIP3Q96DZ5 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
CLIP3Q96DZ5 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CLIP3Q96DZ5 LGALS8-AS1-201ENST00000487567 1457 ntBASIC18.2■□□□□ 0.5
CLIP3Q96DZ5 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CLIP3Q96DZ5 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
CLIP3Q96DZ5 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
CLIP3Q96DZ5 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
CLIP3Q96DZ5 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
CLIP3Q96DZ5 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CLIP3Q96DZ5 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CLIP3Q96DZ5 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CLIP3Q96DZ5 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
CLIP3Q96DZ5 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC18.2■□□□□ 0.5
CLIP3Q96DZ5 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CLIP3Q96DZ5 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms