Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC19.3■□□□□ 0.68
SHROOM3Q8TF72 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
SHROOM3Q8TF72 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
SHROOM3Q8TF72 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SHROOM3Q8TF72 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC19.3■□□□□ 0.68
SHROOM3Q8TF72 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SHROOM3Q8TF72 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC19.3■□□□□ 0.68
SHROOM3Q8TF72 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SHROOM3Q8TF72 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
SHROOM3Q8TF72 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
SHROOM3Q8TF72 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
SHROOM3Q8TF72 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SHROOM3Q8TF72 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SHROOM3Q8TF72 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
SHROOM3Q8TF72 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SHROOM3Q8TF72 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SHROOM3Q8TF72 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SHROOM3Q8TF72 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
SHROOM3Q8TF72 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
SHROOM3Q8TF72 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
SHROOM3Q8TF72 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SHROOM3Q8TF72 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC19.29■□□□□ 0.68
SHROOM3Q8TF72 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC19.29■□□□□ 0.68
SHROOM3Q8TF72 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC19.29■□□□□ 0.68
SHROOM3Q8TF72 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SHROOM3Q8TF72 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SHROOM3Q8TF72 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC19.29■□□□□ 0.68
SHROOM3Q8TF72 COBL-210ENST00000632460 1941 ntTSL 5 BASIC19.29■□□□□ 0.68
SHROOM3Q8TF72 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SHROOM3Q8TF72 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
SHROOM3Q8TF72 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SHROOM3Q8TF72 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC19.29■□□□□ 0.68
SHROOM3Q8TF72 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC19.29■□□□□ 0.68
SHROOM3Q8TF72 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
SHROOM3Q8TF72 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SHROOM3Q8TF72 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC19.28■□□□□ 0.68
SHROOM3Q8TF72 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC19.28■□□□□ 0.68
SHROOM3Q8TF72 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC19.28■□□□□ 0.68
SHROOM3Q8TF72 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC19.28■□□□□ 0.68
SHROOM3Q8TF72 RMI2-205ENST00000576027 818 ntTSL 2 BASIC19.28■□□□□ 0.68
SHROOM3Q8TF72 AP000525.1-201ENST00000608286 694 ntBASIC19.28■□□□□ 0.68
SHROOM3Q8TF72 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
SHROOM3Q8TF72 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
SHROOM3Q8TF72 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SHROOM3Q8TF72 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SHROOM3Q8TF72 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SHROOM3Q8TF72 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SHROOM3Q8TF72 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC19.28■□□□□ 0.68
SHROOM3Q8TF72 CA15P1-201ENST00000481698 905 ntBASIC19.28■□□□□ 0.68
SHROOM3Q8TF72 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC19.28■□□□□ 0.68
SHROOM3Q8TF72 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC19.28■□□□□ 0.68
SHROOM3Q8TF72 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC19.28■□□□□ 0.68
SHROOM3Q8TF72 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC19.28■□□□□ 0.68
SHROOM3Q8TF72 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC19.28■□□□□ 0.68
SHROOM3Q8TF72 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
SHROOM3Q8TF72 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SHROOM3Q8TF72 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC19.27■□□□□ 0.68
SHROOM3Q8TF72 SNAI3-AS1-205ENST00000568633 2096 ntBASIC19.27■□□□□ 0.68
SHROOM3Q8TF72 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
SHROOM3Q8TF72 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
SHROOM3Q8TF72 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SHROOM3Q8TF72 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
SHROOM3Q8TF72 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
SHROOM3Q8TF72 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC19.27■□□□□ 0.68
SHROOM3Q8TF72 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SHROOM3Q8TF72 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
SHROOM3Q8TF72 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SHROOM3Q8TF72 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
SHROOM3Q8TF72 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SHROOM3Q8TF72 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC19.27■□□□□ 0.68
SHROOM3Q8TF72 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SHROOM3Q8TF72 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
SHROOM3Q8TF72 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC19.27■□□□□ 0.68
SHROOM3Q8TF72 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.68
SHROOM3Q8TF72 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC19.27■□□□□ 0.68
SHROOM3Q8TF72 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC19.27■□□□□ 0.68
SHROOM3Q8TF72 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SHROOM3Q8TF72 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC19.27■□□□□ 0.68
SHROOM3Q8TF72 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
SHROOM3Q8TF72 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
SHROOM3Q8TF72 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC19.27■□□□□ 0.67
SHROOM3Q8TF72 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.67
SHROOM3Q8TF72 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC19.26■□□□□ 0.67
SHROOM3Q8TF72 AC007663.1-201ENST00000438948 1240 ntBASIC19.26■□□□□ 0.67
SHROOM3Q8TF72 GXYLT1P6-201ENST00000456472 1187 ntBASIC19.26■□□□□ 0.67
SHROOM3Q8TF72 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC19.26■□□□□ 0.67
SHROOM3Q8TF72 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC19.26■□□□□ 0.67
SHROOM3Q8TF72 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SHROOM3Q8TF72 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC19.26■□□□□ 0.67
SHROOM3Q8TF72 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC19.26■□□□□ 0.67
SHROOM3Q8TF72 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC19.26■□□□□ 0.67
SHROOM3Q8TF72 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SHROOM3Q8TF72 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
SHROOM3Q8TF72 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SHROOM3Q8TF72 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC19.26■□□□□ 0.67
SHROOM3Q8TF72 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
SHROOM3Q8TF72 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SHROOM3Q8TF72 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SHROOM3Q8TF72 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SHROOM3Q8TF72 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms