Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CCDC65Q8IXS2 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC21.02■□□□□ 0.96
CCDC65Q8IXS2 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC21.02■□□□□ 0.96
CCDC65Q8IXS2 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC21.02■□□□□ 0.96
CCDC65Q8IXS2 AC083906.6-201ENST00000641366 219 ntBASIC21.02■□□□□ 0.96
CCDC65Q8IXS2 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC21.02■□□□□ 0.96
CCDC65Q8IXS2 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
CCDC65Q8IXS2 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC21.02■□□□□ 0.95
CCDC65Q8IXS2 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.95
CCDC65Q8IXS2 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.95
CCDC65Q8IXS2 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC21.01■□□□□ 0.95
CCDC65Q8IXS2 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CCDC65Q8IXS2 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC21.01■□□□□ 0.95
CCDC65Q8IXS2 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CCDC65Q8IXS2 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
CCDC65Q8IXS2 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CCDC65Q8IXS2 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC21.01■□□□□ 0.95
CCDC65Q8IXS2 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CCDC65Q8IXS2 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CCDC65Q8IXS2 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC21.01■□□□□ 0.95
CCDC65Q8IXS2 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC21.01■□□□□ 0.95
CCDC65Q8IXS2 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC21.01■□□□□ 0.95
CCDC65Q8IXS2 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC21.01■□□□□ 0.95
CCDC65Q8IXS2 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC21.01■□□□□ 0.95
CCDC65Q8IXS2 REXO1L10P-201ENST00000615707 1290 ntBASIC21.01■□□□□ 0.95
CCDC65Q8IXS2 REXO1L12P-201ENST00000622156 912 ntBASIC21.01■□□□□ 0.95
CCDC65Q8IXS2 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CCDC65Q8IXS2 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC21.01■□□□□ 0.95
CCDC65Q8IXS2 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CCDC65Q8IXS2 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC21.01■□□□□ 0.95
CCDC65Q8IXS2 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CCDC65Q8IXS2 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CCDC65Q8IXS2 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CCDC65Q8IXS2 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC21■□□□□ 0.95
CCDC65Q8IXS2 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC21■□□□□ 0.95
CCDC65Q8IXS2 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC21■□□□□ 0.95
CCDC65Q8IXS2 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC21■□□□□ 0.95
CCDC65Q8IXS2 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CCDC65Q8IXS2 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
CCDC65Q8IXS2 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC21■□□□□ 0.95
CCDC65Q8IXS2 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CCDC65Q8IXS2 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CCDC65Q8IXS2 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
CCDC65Q8IXS2 KRT8P3-201ENST00000519669 1449 ntBASIC21■□□□□ 0.95
CCDC65Q8IXS2 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC21■□□□□ 0.95
CCDC65Q8IXS2 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
CCDC65Q8IXS2 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
CCDC65Q8IXS2 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC65Q8IXS2 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC65Q8IXS2 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC65Q8IXS2 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC20.99■□□□□ 0.95
CCDC65Q8IXS2 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC65Q8IXS2 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC20.99■□□□□ 0.95
CCDC65Q8IXS2 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC65Q8IXS2 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC20.99■□□□□ 0.95
CCDC65Q8IXS2 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC65Q8IXS2 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC65Q8IXS2 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC65Q8IXS2 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC20.99■□□□□ 0.95
CCDC65Q8IXS2 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC65Q8IXS2 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC65Q8IXS2 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC20.99■□□□□ 0.95
CCDC65Q8IXS2 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC20.99■□□□□ 0.95
CCDC65Q8IXS2 SLC25A1P4-201ENST00000567977 778 ntBASIC20.99■□□□□ 0.95
CCDC65Q8IXS2 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC20.99■□□□□ 0.95
CCDC65Q8IXS2 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC20.99■□□□□ 0.95
CCDC65Q8IXS2 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC65Q8IXS2 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC20.99■□□□□ 0.95
CCDC65Q8IXS2 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC65Q8IXS2 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC65Q8IXS2 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC65Q8IXS2 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC65Q8IXS2 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC20.99■□□□□ 0.95
CCDC65Q8IXS2 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC65Q8IXS2 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CCDC65Q8IXS2 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CCDC65Q8IXS2 AC096733.2-201ENST00000609937 1394 ntBASIC20.98■□□□□ 0.95
CCDC65Q8IXS2 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC20.98■□□□□ 0.95
CCDC65Q8IXS2 AC093525.10-201ENST00000625130 1569 ntBASIC20.98■□□□□ 0.95
CCDC65Q8IXS2 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CCDC65Q8IXS2 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
CCDC65Q8IXS2 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC20.98■□□□□ 0.95
CCDC65Q8IXS2 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
CCDC65Q8IXS2 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC20.98■□□□□ 0.95
CCDC65Q8IXS2 AC097488.1-201ENST00000507834 756 ntBASIC20.98■□□□□ 0.95
CCDC65Q8IXS2 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC20.98■□□□□ 0.95
CCDC65Q8IXS2 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC20.98■□□□□ 0.95
CCDC65Q8IXS2 AP003071.4-201ENST00000562276 1284 ntBASIC20.98■□□□□ 0.95
CCDC65Q8IXS2 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC20.98■□□□□ 0.95
CCDC65Q8IXS2 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC20.98■□□□□ 0.95
CCDC65Q8IXS2 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CCDC65Q8IXS2 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC20.98■□□□□ 0.95
CCDC65Q8IXS2 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC20.98■□□□□ 0.95
CCDC65Q8IXS2 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC20.98■□□□□ 0.95
CCDC65Q8IXS2 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CCDC65Q8IXS2 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
CCDC65Q8IXS2 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC20.97■□□□□ 0.95
CCDC65Q8IXS2 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
CCDC65Q8IXS2 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC20.97■□□□□ 0.95
CCDC65Q8IXS2 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC20.97■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms