Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
USP48Q86UV5 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC23.19■■□□□ 1.3
USP48Q86UV5 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC23.19■■□□□ 1.3
USP48Q86UV5 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC23.19■■□□□ 1.3
USP48Q86UV5 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC23.19■■□□□ 1.3
USP48Q86UV5 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC23.19■■□□□ 1.3
USP48Q86UV5 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
USP48Q86UV5 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC23.19■■□□□ 1.3
USP48Q86UV5 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC23.19■■□□□ 1.3
USP48Q86UV5 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC23.19■■□□□ 1.3
USP48Q86UV5 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC23.19■■□□□ 1.3
USP48Q86UV5 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
USP48Q86UV5 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC23.19■■□□□ 1.3
USP48Q86UV5 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC23.18■■□□□ 1.3
USP48Q86UV5 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC23.18■■□□□ 1.3
USP48Q86UV5 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
USP48Q86UV5 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
USP48Q86UV5 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC23.18■■□□□ 1.3
USP48Q86UV5 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC23.18■■□□□ 1.3
USP48Q86UV5 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
USP48Q86UV5 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC23.18■■□□□ 1.3
USP48Q86UV5 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
USP48Q86UV5 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
USP48Q86UV5 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
USP48Q86UV5 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC23.18■■□□□ 1.3
USP48Q86UV5 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
USP48Q86UV5 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
USP48Q86UV5 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC23.18■■□□□ 1.3
USP48Q86UV5 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC23.18■■□□□ 1.3
USP48Q86UV5 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC23.18■■□□□ 1.3
USP48Q86UV5 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC23.18■■□□□ 1.3
USP48Q86UV5 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC23.18■■□□□ 1.3
USP48Q86UV5 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC23.18■■□□□ 1.3
USP48Q86UV5 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC23.18■■□□□ 1.3
USP48Q86UV5 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC23.18■■□□□ 1.3
USP48Q86UV5 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
USP48Q86UV5 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC23.18■■□□□ 1.3
USP48Q86UV5 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC23.18■■□□□ 1.3
USP48Q86UV5 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC23.18■■□□□ 1.3
USP48Q86UV5 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
USP48Q86UV5 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC23.17■■□□□ 1.3
USP48Q86UV5 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
USP48Q86UV5 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
USP48Q86UV5 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
USP48Q86UV5 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
USP48Q86UV5 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
USP48Q86UV5 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
USP48Q86UV5 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC23.17■■□□□ 1.3
USP48Q86UV5 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC23.17■■□□□ 1.3
USP48Q86UV5 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC23.17■■□□□ 1.3
USP48Q86UV5 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC23.17■■□□□ 1.3
USP48Q86UV5 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
USP48Q86UV5 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
USP48Q86UV5 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC23.17■■□□□ 1.3
USP48Q86UV5 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC23.17■■□□□ 1.3
USP48Q86UV5 AP003041.3-201ENST00000527151 707 ntBASIC23.17■■□□□ 1.3
USP48Q86UV5 ZNF444P1-201ENST00000559497 298 ntBASIC23.17■■□□□ 1.3
USP48Q86UV5 AC083849.1-201ENST00000615227 514 ntBASIC23.17■■□□□ 1.3
USP48Q86UV5 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC23.17■■□□□ 1.3
USP48Q86UV5 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC23.17■■□□□ 1.3
USP48Q86UV5 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC23.17■■□□□ 1.3
USP48Q86UV5 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
USP48Q86UV5 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
USP48Q86UV5 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC23.17■■□□□ 1.3
USP48Q86UV5 KRT8P45-201ENST00000414328 1447 ntBASIC23.16■■□□□ 1.3
USP48Q86UV5 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
USP48Q86UV5 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
USP48Q86UV5 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC23.16■■□□□ 1.3
USP48Q86UV5 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
USP48Q86UV5 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
USP48Q86UV5 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC23.16■■□□□ 1.3
USP48Q86UV5 Telomerase-vert.1-201ENST00000363312 438 ntBASIC23.16■■□□□ 1.3
USP48Q86UV5 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC23.16■■□□□ 1.3
USP48Q86UV5 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC23.16■■□□□ 1.3
USP48Q86UV5 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC23.16■■□□□ 1.3
USP48Q86UV5 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC23.16■■□□□ 1.3
USP48Q86UV5 KLK8-205ENST00000593490 267 ntTSL 3 BASIC23.16■■□□□ 1.3
USP48Q86UV5 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
USP48Q86UV5 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
USP48Q86UV5 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
USP48Q86UV5 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
USP48Q86UV5 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
USP48Q86UV5 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
USP48Q86UV5 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC23.15■■□□□ 1.3
USP48Q86UV5 ATP5G2P1-201ENST00000433580 426 ntBASIC23.15■■□□□ 1.3
USP48Q86UV5 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC23.15■■□□□ 1.3
USP48Q86UV5 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC23.15■■□□□ 1.3
USP48Q86UV5 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC23.15■■□□□ 1.3
USP48Q86UV5 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
USP48Q86UV5 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC23.15■■□□□ 1.3
USP48Q86UV5 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC23.15■■□□□ 1.3
USP48Q86UV5 TNXA-203ENST00000507684 2038 ntBASIC23.15■■□□□ 1.3
USP48Q86UV5 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
USP48Q86UV5 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC23.14■■□□□ 1.3
USP48Q86UV5 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC23.14■■□□□ 1.3
USP48Q86UV5 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC23.14■■□□□ 1.3
USP48Q86UV5 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC23.14■■□□□ 1.3
USP48Q86UV5 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC23.14■■□□□ 1.3
USP48Q86UV5 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
USP48Q86UV5 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms