Protein–RNA interactions for Protein: Q5M7Z0

RNFT1, E3 ubiquitin-protein ligase RNFT1, humanhuman

Predictions only

Length 435 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNFT1Q5M7Z0 KRT18P56-201ENST00000507275 550 ntBASIC17.05■□□□□ 0.32
RNFT1Q5M7Z0 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC17.05■□□□□ 0.32
RNFT1Q5M7Z0 MIR3180-5-201ENST00000583743 153 ntBASIC17.05■□□□□ 0.32
RNFT1Q5M7Z0 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC17.05■□□□□ 0.32
RNFT1Q5M7Z0 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC17.05■□□□□ 0.32
RNFT1Q5M7Z0 FGF14-AS2-201ENST00000606448 1074 ntBASIC17.05■□□□□ 0.32
RNFT1Q5M7Z0 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
RNFT1Q5M7Z0 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
RNFT1Q5M7Z0 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
RNFT1Q5M7Z0 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
RNFT1Q5M7Z0 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
RNFT1Q5M7Z0 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
RNFT1Q5M7Z0 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC17.05■□□□□ 0.32
RNFT1Q5M7Z0 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
RNFT1Q5M7Z0 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
RNFT1Q5M7Z0 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
RNFT1Q5M7Z0 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
RNFT1Q5M7Z0 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
RNFT1Q5M7Z0 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC17.04■□□□□ 0.32
RNFT1Q5M7Z0 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
RNFT1Q5M7Z0 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
RNFT1Q5M7Z0 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
RNFT1Q5M7Z0 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
RNFT1Q5M7Z0 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC17.04■□□□□ 0.32
RNFT1Q5M7Z0 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC17.04■□□□□ 0.32
RNFT1Q5M7Z0 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
RNFT1Q5M7Z0 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC17.04■□□□□ 0.32
RNFT1Q5M7Z0 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
RNFT1Q5M7Z0 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
RNFT1Q5M7Z0 HBZP1-201ENST00000354915 429 ntBASIC17.04■□□□□ 0.32
RNFT1Q5M7Z0 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
RNFT1Q5M7Z0 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC17.04■□□□□ 0.32
RNFT1Q5M7Z0 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC17.04■□□□□ 0.32
RNFT1Q5M7Z0 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC17.04■□□□□ 0.32
RNFT1Q5M7Z0 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
RNFT1Q5M7Z0 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
RNFT1Q5M7Z0 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC17.04■□□□□ 0.32
RNFT1Q5M7Z0 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC17.04■□□□□ 0.32
RNFT1Q5M7Z0 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
RNFT1Q5M7Z0 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC17.04■□□□□ 0.32
RNFT1Q5M7Z0 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
RNFT1Q5M7Z0 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
RNFT1Q5M7Z0 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC17.04■□□□□ 0.32
RNFT1Q5M7Z0 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC17.04■□□□□ 0.32
RNFT1Q5M7Z0 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
RNFT1Q5M7Z0 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC17.04■□□□□ 0.32
RNFT1Q5M7Z0 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
RNFT1Q5M7Z0 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
RNFT1Q5M7Z0 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
RNFT1Q5M7Z0 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
RNFT1Q5M7Z0 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
RNFT1Q5M7Z0 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
RNFT1Q5M7Z0 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
RNFT1Q5M7Z0 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
RNFT1Q5M7Z0 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC17.03■□□□□ 0.32
RNFT1Q5M7Z0 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
RNFT1Q5M7Z0 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
RNFT1Q5M7Z0 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
RNFT1Q5M7Z0 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
RNFT1Q5M7Z0 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC17.03■□□□□ 0.32
RNFT1Q5M7Z0 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC17.03■□□□□ 0.32
RNFT1Q5M7Z0 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC17.03■□□□□ 0.32
RNFT1Q5M7Z0 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
RNFT1Q5M7Z0 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
RNFT1Q5M7Z0 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
RNFT1Q5M7Z0 BID-204ENST00000399767 2129 ntTSL 2 BASIC17.03■□□□□ 0.32
RNFT1Q5M7Z0 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
RNFT1Q5M7Z0 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
RNFT1Q5M7Z0 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
RNFT1Q5M7Z0 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC17.03■□□□□ 0.32
RNFT1Q5M7Z0 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
RNFT1Q5M7Z0 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
RNFT1Q5M7Z0 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
RNFT1Q5M7Z0 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
RNFT1Q5M7Z0 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
RNFT1Q5M7Z0 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
RNFT1Q5M7Z0 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC17.02■□□□□ 0.32
RNFT1Q5M7Z0 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
RNFT1Q5M7Z0 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC17.02■□□□□ 0.32
RNFT1Q5M7Z0 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
RNFT1Q5M7Z0 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC17.02■□□□□ 0.32
RNFT1Q5M7Z0 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
RNFT1Q5M7Z0 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
RNFT1Q5M7Z0 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC17.02■□□□□ 0.32
RNFT1Q5M7Z0 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC17.02■□□□□ 0.32
RNFT1Q5M7Z0 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
RNFT1Q5M7Z0 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC17.02■□□□□ 0.32
RNFT1Q5M7Z0 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
RNFT1Q5M7Z0 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
RNFT1Q5M7Z0 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.31
RNFT1Q5M7Z0 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
RNFT1Q5M7Z0 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
RNFT1Q5M7Z0 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
RNFT1Q5M7Z0 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
RNFT1Q5M7Z0 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC17.01■□□□□ 0.31
RNFT1Q5M7Z0 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
RNFT1Q5M7Z0 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
RNFT1Q5M7Z0 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
RNFT1Q5M7Z0 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
RNFT1Q5M7Z0 SLC25A24-204ENST00000569674 2357 ntBASIC17.01■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms