Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
RFX4Q33E94 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
RFX4Q33E94 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC17.62■□□□□ 0.41
RFX4Q33E94 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC17.62■□□□□ 0.41
RFX4Q33E94 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC17.62■□□□□ 0.41
RFX4Q33E94 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
RFX4Q33E94 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC17.62■□□□□ 0.41
RFX4Q33E94 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC17.62■□□□□ 0.41
RFX4Q33E94 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
RFX4Q33E94 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
RFX4Q33E94 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
RFX4Q33E94 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
RFX4Q33E94 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
RFX4Q33E94 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RFX4Q33E94 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
RFX4Q33E94 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
RFX4Q33E94 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
RFX4Q33E94 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC17.61■□□□□ 0.41
RFX4Q33E94 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
RFX4Q33E94 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RFX4Q33E94 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC17.61■□□□□ 0.41
RFX4Q33E94 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RFX4Q33E94 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
RFX4Q33E94 AC073210.2-201ENST00000430369 194 ntBASIC17.61■□□□□ 0.41
RFX4Q33E94 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC17.61■□□□□ 0.41
RFX4Q33E94 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC17.61■□□□□ 0.41
RFX4Q33E94 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RFX4Q33E94 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC17.61■□□□□ 0.41
RFX4Q33E94 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RFX4Q33E94 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
RFX4Q33E94 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
RFX4Q33E94 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
RFX4Q33E94 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC17.61■□□□□ 0.41
RFX4Q33E94 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC17.61■□□□□ 0.41
RFX4Q33E94 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC17.61■□□□□ 0.41
RFX4Q33E94 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RFX4Q33E94 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC17.61■□□□□ 0.41
RFX4Q33E94 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
RFX4Q33E94 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC17.61■□□□□ 0.41
RFX4Q33E94 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
RFX4Q33E94 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
RFX4Q33E94 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
RFX4Q33E94 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC17.6■□□□□ 0.41
RFX4Q33E94 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
RFX4Q33E94 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC17.6■□□□□ 0.41
RFX4Q33E94 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
RFX4Q33E94 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
RFX4Q33E94 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
RFX4Q33E94 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
RFX4Q33E94 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC17.6■□□□□ 0.41
RFX4Q33E94 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC17.6■□□□□ 0.41
RFX4Q33E94 SERPINH1P1-201ENST00000419794 1249 ntBASIC17.6■□□□□ 0.41
RFX4Q33E94 HES2-206ENST00000489730 730 ntTSL 2 BASIC17.6■□□□□ 0.41
RFX4Q33E94 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC17.6■□□□□ 0.41
RFX4Q33E94 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC17.6■□□□□ 0.41
RFX4Q33E94 AC005829.2-201ENST00000571422 1056 ntBASIC17.6■□□□□ 0.41
RFX4Q33E94 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC17.6■□□□□ 0.41
RFX4Q33E94 AL050303.2-201ENST00000619798 666 ntBASIC17.6■□□□□ 0.41
RFX4Q33E94 CRK-204ENST00000574295 1391 ntTSL 5 BASIC17.6■□□□□ 0.41
RFX4Q33E94 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
RFX4Q33E94 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
RFX4Q33E94 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
RFX4Q33E94 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC17.6■□□□□ 0.41
RFX4Q33E94 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
RFX4Q33E94 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
RFX4Q33E94 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
RFX4Q33E94 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC17.6■□□□□ 0.41
RFX4Q33E94 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
RFX4Q33E94 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC17.59■□□□□ 0.41
RFX4Q33E94 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
RFX4Q33E94 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
RFX4Q33E94 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
RFX4Q33E94 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
RFX4Q33E94 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
RFX4Q33E94 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
RFX4Q33E94 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
RFX4Q33E94 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
RFX4Q33E94 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC17.59■□□□□ 0.41
RFX4Q33E94 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
RFX4Q33E94 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
RFX4Q33E94 MFF-205ENST00000354503 1085 ntTSL 2 BASIC17.59■□□□□ 0.41
RFX4Q33E94 MIR935-201ENST00000401179 91 ntBASIC17.59■□□□□ 0.41
RFX4Q33E94 CDCA4P2-201ENST00000441182 718 ntBASIC17.59■□□□□ 0.41
RFX4Q33E94 NME1-207ENST00000480143 964 ntTSL 2 BASIC17.59■□□□□ 0.41
RFX4Q33E94 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
RFX4Q33E94 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC17.59■□□□□ 0.41
RFX4Q33E94 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
RFX4Q33E94 AC092437.1-201ENST00000624794 1048 ntBASIC17.59■□□□□ 0.41
RFX4Q33E94 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
RFX4Q33E94 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
RFX4Q33E94 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC17.59■□□□□ 0.41
RFX4Q33E94 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC17.59■□□□□ 0.41
RFX4Q33E94 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
RFX4Q33E94 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
RFX4Q33E94 COBL-210ENST00000632460 1941 ntTSL 5 BASIC17.59■□□□□ 0.41
RFX4Q33E94 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
RFX4Q33E94 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
RFX4Q33E94 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.41
RFX4Q33E94 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
RFX4Q33E94 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms