Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 AC020907.5-201ENST00000624372 1936 ntBASIC18.7■□□□□ 0.58
LIMK1P53667 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
LIMK1P53667 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
LIMK1P53667 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
LIMK1P53667 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC18.7■□□□□ 0.58
LIMK1P53667 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC18.7■□□□□ 0.58
LIMK1P53667 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
LIMK1P53667 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
LIMK1P53667 DPP3P2-201ENST00000416030 1696 ntBASIC18.69■□□□□ 0.58
LIMK1P53667 KRT8P41-201ENST00000533985 1514 ntBASIC18.69■□□□□ 0.58
LIMK1P53667 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
LIMK1P53667 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
LIMK1P53667 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
LIMK1P53667 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LIMK1P53667 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LIMK1P53667 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
LIMK1P53667 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
LIMK1P53667 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LIMK1P53667 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LIMK1P53667 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
LIMK1P53667 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LIMK1P53667 KRT18P13-201ENST00000400056 1290 ntBASIC18.69■□□□□ 0.58
LIMK1P53667 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC18.69■□□□□ 0.58
LIMK1P53667 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC18.69■□□□□ 0.58
LIMK1P53667 MPI-205ENST00000562606 1052 ntTSL 3 BASIC18.69■□□□□ 0.58
LIMK1P53667 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC18.69■□□□□ 0.58
LIMK1P53667 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LIMK1P53667 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LIMK1P53667 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC18.69■□□□□ 0.58
LIMK1P53667 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC18.69■□□□□ 0.58
LIMK1P53667 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
LIMK1P53667 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
LIMK1P53667 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LIMK1P53667 AC093525.10-201ENST00000625130 1569 ntBASIC18.68■□□□□ 0.58
LIMK1P53667 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
LIMK1P53667 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC18.68■□□□□ 0.58
LIMK1P53667 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
LIMK1P53667 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC18.68■□□□□ 0.58
LIMK1P53667 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
LIMK1P53667 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC18.68■□□□□ 0.58
LIMK1P53667 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
LIMK1P53667 RPP21-221ENST00000428040 594 ntTSL 2 BASIC18.68■□□□□ 0.58
LIMK1P53667 PMS2P1-201ENST00000431037 1228 ntBASIC18.68■□□□□ 0.58
LIMK1P53667 DRAXINP1-201ENST00000437611 948 ntBASIC18.68■□□□□ 0.58
LIMK1P53667 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
LIMK1P53667 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC18.68■□□□□ 0.58
LIMK1P53667 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC18.68■□□□□ 0.58
LIMK1P53667 CALM3-211ENST00000598871 561 ntTSL 4 BASIC18.68■□□□□ 0.58
LIMK1P53667 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC18.68■□□□□ 0.58
LIMK1P53667 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC18.68■□□□□ 0.58
LIMK1P53667 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
LIMK1P53667 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
LIMK1P53667 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
LIMK1P53667 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
LIMK1P53667 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
LIMK1P53667 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
LIMK1P53667 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC18.68■□□□□ 0.58
LIMK1P53667 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
LIMK1P53667 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
LIMK1P53667 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
LIMK1P53667 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
LIMK1P53667 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
LIMK1P53667 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LIMK1P53667 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LIMK1P53667 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC18.67■□□□□ 0.58
LIMK1P53667 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC18.67■□□□□ 0.58
LIMK1P53667 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LIMK1P53667 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LIMK1P53667 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LIMK1P53667 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
LIMK1P53667 ILF2-202ENST00000368681 726 ntTSL 2 BASIC18.67■□□□□ 0.58
LIMK1P53667 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC18.67■□□□□ 0.58
LIMK1P53667 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC18.67■□□□□ 0.58
LIMK1P53667 AC079776.4-201ENST00000511039 504 ntBASIC18.67■□□□□ 0.58
LIMK1P53667 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
LIMK1P53667 BMF-207ENST00000559701 630 ntTSL 3 BASIC18.67■□□□□ 0.58
LIMK1P53667 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC18.67■□□□□ 0.58
LIMK1P53667 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LIMK1P53667 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC18.67■□□□□ 0.58
LIMK1P53667 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LIMK1P53667 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC18.67■□□□□ 0.58
LIMK1P53667 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC18.67■□□□□ 0.58
LIMK1P53667 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC18.67■□□□□ 0.58
LIMK1P53667 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
LIMK1P53667 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC18.67■□□□□ 0.58
LIMK1P53667 AC018445.3-201ENST00000624177 1945 ntBASIC18.66■□□□□ 0.58
LIMK1P53667 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
LIMK1P53667 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC18.66■□□□□ 0.58
LIMK1P53667 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
LIMK1P53667 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LIMK1P53667 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
LIMK1P53667 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
LIMK1P53667 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC18.66■□□□□ 0.58
LIMK1P53667 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC18.66■□□□□ 0.58
LIMK1P53667 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
LIMK1P53667 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
LIMK1P53667 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LIMK1P53667 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC18.66■□□□□ 0.58
LIMK1P53667 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LIMK1P53667 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 20.3 ms