Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC17.8■□□□□ 0.44
SOX3P41225 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC17.8■□□□□ 0.44
SOX3P41225 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
SOX3P41225 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SOX3P41225 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SOX3P41225 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SOX3P41225 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SOX3P41225 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
SOX3P41225 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
SOX3P41225 AC004951.3-201ENST00000418645 1148 ntBASIC17.8■□□□□ 0.44
SOX3P41225 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC17.8■□□□□ 0.44
SOX3P41225 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC17.8■□□□□ 0.44
SOX3P41225 Z85996.1-201ENST00000494644 937 ntBASIC17.8■□□□□ 0.44
SOX3P41225 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC17.8■□□□□ 0.44
SOX3P41225 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
SOX3P41225 AC011298.2-201ENST00000617989 482 ntBASIC17.8■□□□□ 0.44
SOX3P41225 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC17.8■□□□□ 0.44
SOX3P41225 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC17.8■□□□□ 0.44
SOX3P41225 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
SOX3P41225 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SOX3P41225 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC17.8■□□□□ 0.44
SOX3P41225 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
SOX3P41225 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SOX3P41225 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC17.79■□□□□ 0.44
SOX3P41225 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
SOX3P41225 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
SOX3P41225 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SOX3P41225 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
SOX3P41225 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SOX3P41225 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
SOX3P41225 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC17.79■□□□□ 0.44
SOX3P41225 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC17.79■□□□□ 0.44
SOX3P41225 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC17.79■□□□□ 0.44
SOX3P41225 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC17.79■□□□□ 0.44
SOX3P41225 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
SOX3P41225 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
SOX3P41225 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
SOX3P41225 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
SOX3P41225 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
SOX3P41225 ECEL1P3-201ENST00000427961 737 ntBASIC17.79■□□□□ 0.44
SOX3P41225 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
SOX3P41225 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC17.79■□□□□ 0.44
SOX3P41225 AC133561.5-201ENST00000635547 218 ntBASIC17.79■□□□□ 0.44
SOX3P41225 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SOX3P41225 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SOX3P41225 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SOX3P41225 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SOX3P41225 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
SOX3P41225 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SOX3P41225 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC17.79■□□□□ 0.44
SOX3P41225 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
SOX3P41225 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
SOX3P41225 ANKRD18DP-204ENST00000455355 1975 ntBASIC17.79■□□□□ 0.44
SOX3P41225 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
SOX3P41225 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
SOX3P41225 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SOX3P41225 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SOX3P41225 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SOX3P41225 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
SOX3P41225 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SOX3P41225 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC17.78■□□□□ 0.44
SOX3P41225 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
SOX3P41225 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SOX3P41225 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC17.78■□□□□ 0.44
SOX3P41225 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
SOX3P41225 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SOX3P41225 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
SOX3P41225 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SOX3P41225 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
SOX3P41225 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC17.78■□□□□ 0.44
SOX3P41225 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC17.78■□□□□ 0.44
SOX3P41225 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC17.78■□□□□ 0.44
SOX3P41225 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC17.78■□□□□ 0.44
SOX3P41225 DGCR10-201ENST00000609839 495 ntBASIC17.78■□□□□ 0.44
SOX3P41225 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC17.78■□□□□ 0.44
SOX3P41225 AC130371.2-201ENST00000619443 611 ntBASIC17.78■□□□□ 0.44
SOX3P41225 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC17.78■□□□□ 0.44
SOX3P41225 KRT8P9-201ENST00000558927 1449 ntBASIC17.78■□□□□ 0.44
SOX3P41225 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC17.78■□□□□ 0.44
SOX3P41225 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
SOX3P41225 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SOX3P41225 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC17.78■□□□□ 0.44
SOX3P41225 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
SOX3P41225 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC17.78■□□□□ 0.44
SOX3P41225 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC17.78■□□□□ 0.44
SOX3P41225 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SOX3P41225 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SOX3P41225 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.44
SOX3P41225 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SOX3P41225 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC17.77■□□□□ 0.44
SOX3P41225 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC17.77■□□□□ 0.44
SOX3P41225 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
SOX3P41225 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SOX3P41225 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC17.77■□□□□ 0.44
SOX3P41225 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC17.77■□□□□ 0.44
SOX3P41225 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
SOX3P41225 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SOX3P41225 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SOX3P41225 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC17.77■□□□□ 0.44
SOX3P41225 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 42.9 ms