Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
COL6A3P12111 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
COL6A3P12111 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
COL6A3P12111 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
COL6A3P12111 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
COL6A3P12111 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC19.77■□□□□ 0.75
COL6A3P12111 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC19.77■□□□□ 0.75
COL6A3P12111 AF228730.6-201ENST00000641497 218 ntBASIC19.77■□□□□ 0.75
COL6A3P12111 AC084121.3-201ENST00000641716 218 ntBASIC19.77■□□□□ 0.75
COL6A3P12111 AC105233.6-201ENST00000642093 218 ntBASIC19.77■□□□□ 0.75
COL6A3P12111 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.75
COL6A3P12111 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
COL6A3P12111 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.75
COL6A3P12111 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC19.76■□□□□ 0.75
COL6A3P12111 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC19.76■□□□□ 0.75
COL6A3P12111 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
COL6A3P12111 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC19.76■□□□□ 0.75
COL6A3P12111 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC19.76■□□□□ 0.75
COL6A3P12111 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC19.76■□□□□ 0.75
COL6A3P12111 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC19.76■□□□□ 0.75
COL6A3P12111 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC19.76■□□□□ 0.75
COL6A3P12111 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC19.76■□□□□ 0.75
COL6A3P12111 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
COL6A3P12111 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
COL6A3P12111 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
COL6A3P12111 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC19.76■□□□□ 0.75
COL6A3P12111 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
COL6A3P12111 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
COL6A3P12111 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
COL6A3P12111 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
COL6A3P12111 AL139400.1-201ENST00000366220 510 ntBASIC19.76■□□□□ 0.75
COL6A3P12111 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC19.76■□□□□ 0.75
COL6A3P12111 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC19.76■□□□□ 0.75
COL6A3P12111 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC19.76■□□□□ 0.75
COL6A3P12111 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC19.76■□□□□ 0.75
COL6A3P12111 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
COL6A3P12111 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
COL6A3P12111 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
COL6A3P12111 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC19.75■□□□□ 0.75
COL6A3P12111 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
COL6A3P12111 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC19.75■□□□□ 0.75
COL6A3P12111 PON3-205ENST00000451904 1053 ntTSL 3 BASIC19.75■□□□□ 0.75
COL6A3P12111 RN7SL606P-201ENST00000472779 293 ntBASIC19.75■□□□□ 0.75
COL6A3P12111 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC19.75■□□□□ 0.75
COL6A3P12111 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC19.75■□□□□ 0.75
COL6A3P12111 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC19.75■□□□□ 0.75
COL6A3P12111 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
COL6A3P12111 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
COL6A3P12111 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
COL6A3P12111 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
COL6A3P12111 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
COL6A3P12111 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
COL6A3P12111 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC19.75■□□□□ 0.75
COL6A3P12111 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
COL6A3P12111 AC005498.2-205ENST00000593218 784 ntBASIC19.75■□□□□ 0.75
COL6A3P12111 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
COL6A3P12111 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
COL6A3P12111 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC19.75■□□□□ 0.75
COL6A3P12111 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC19.75■□□□□ 0.75
COL6A3P12111 TAF8-206ENST00000472818 719 ntTSL 2 BASIC19.75■□□□□ 0.75
COL6A3P12111 AC005829.1-201ENST00000570002 483 ntBASIC19.75■□□□□ 0.75
COL6A3P12111 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
COL6A3P12111 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC19.75■□□□□ 0.75
COL6A3P12111 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL6A3P12111 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL6A3P12111 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL6A3P12111 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
COL6A3P12111 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
COL6A3P12111 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC19.74■□□□□ 0.75
COL6A3P12111 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL6A3P12111 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
COL6A3P12111 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC19.74■□□□□ 0.75
COL6A3P12111 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC19.74■□□□□ 0.75
COL6A3P12111 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
COL6A3P12111 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC19.74■□□□□ 0.75
COL6A3P12111 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC19.74■□□□□ 0.75
COL6A3P12111 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL6A3P12111 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL6A3P12111 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC19.74■□□□□ 0.75
COL6A3P12111 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
COL6A3P12111 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC19.74■□□□□ 0.75
COL6A3P12111 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC19.73■□□□□ 0.75
COL6A3P12111 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL6A3P12111 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC19.73■□□□□ 0.75
COL6A3P12111 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC19.73■□□□□ 0.75
COL6A3P12111 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC19.73■□□□□ 0.75
COL6A3P12111 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC19.73■□□□□ 0.75
COL6A3P12111 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
COL6A3P12111 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
COL6A3P12111 RABEPK-201ENST00000259460 1313 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
COL6A3P12111 HLA-J-201ENST00000462773 1622 ntBASIC19.73■□□□□ 0.75
COL6A3P12111 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL6A3P12111 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL6A3P12111 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL6A3P12111 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC19.73■□□□□ 0.75
COL6A3P12111 RNA5SP416-201ENST00000516838 111 ntBASIC19.73■□□□□ 0.75
COL6A3P12111 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC19.73■□□□□ 0.75
COL6A3P12111 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
COL6A3P12111 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC19.73■□□□□ 0.75
COL6A3P12111 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC19.72■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 21 ms