Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
COL6A1P12109 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
COL6A1P12109 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC20.89■□□□□ 0.93
COL6A1P12109 AC073314.1-201ENST00000568729 2216 ntBASIC20.89■□□□□ 0.93
COL6A1P12109 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
COL6A1P12109 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
COL6A1P12109 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC20.88■□□□□ 0.93
COL6A1P12109 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC20.88■□□□□ 0.93
COL6A1P12109 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC20.88■□□□□ 0.93
COL6A1P12109 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC20.88■□□□□ 0.93
COL6A1P12109 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC20.88■□□□□ 0.93
COL6A1P12109 TLE1-202ENST00000376484 666 ntTSL 3 BASIC20.88■□□□□ 0.93
COL6A1P12109 LSM5-204ENST00000409909 740 ntTSL 2 BASIC20.88■□□□□ 0.93
COL6A1P12109 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC20.88■□□□□ 0.93
COL6A1P12109 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC20.88■□□□□ 0.93
COL6A1P12109 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC20.88■□□□□ 0.93
COL6A1P12109 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC20.88■□□□□ 0.93
COL6A1P12109 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL6A1P12109 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
COL6A1P12109 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL6A1P12109 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
COL6A1P12109 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC20.88■□□□□ 0.93
COL6A1P12109 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL6A1P12109 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL6A1P12109 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
COL6A1P12109 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL6A1P12109 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
COL6A1P12109 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
COL6A1P12109 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
COL6A1P12109 AL691432.2-201ENST00000607222 2038 ntBASIC20.87■□□□□ 0.93
COL6A1P12109 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC20.87■□□□□ 0.93
COL6A1P12109 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL6A1P12109 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
COL6A1P12109 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
COL6A1P12109 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
COL6A1P12109 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL6A1P12109 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL6A1P12109 KRT18P58-201ENST00000527480 1120 ntBASIC20.87■□□□□ 0.93
COL6A1P12109 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC20.87■□□□□ 0.93
COL6A1P12109 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL6A1P12109 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL6A1P12109 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
COL6A1P12109 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC20.87■□□□□ 0.93
COL6A1P12109 PKD1P6-201ENST00000343738 4769 ntBASIC20.87■□□□□ 0.93
COL6A1P12109 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
COL6A1P12109 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC20.87■□□□□ 0.93
COL6A1P12109 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC20.87■□□□□ 0.93
COL6A1P12109 AL512408.1-201ENST00000569378 2000 ntBASIC20.87■□□□□ 0.93
COL6A1P12109 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC20.87■□□□□ 0.93
COL6A1P12109 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
COL6A1P12109 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC20.86■□□□□ 0.93
COL6A1P12109 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
COL6A1P12109 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC20.86■□□□□ 0.93
COL6A1P12109 GABARAPL3-202ENST00000624044 1851 ntBASIC20.86■□□□□ 0.93
COL6A1P12109 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
COL6A1P12109 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC20.86■□□□□ 0.93
COL6A1P12109 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC20.86■□□□□ 0.93
COL6A1P12109 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
COL6A1P12109 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
COL6A1P12109 MIR1233-2-201ENST00000408138 82 ntBASIC20.86■□□□□ 0.93
COL6A1P12109 MIR1233-1-201ENST00000408722 82 ntBASIC20.86■□□□□ 0.93
COL6A1P12109 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
COL6A1P12109 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC20.86■□□□□ 0.93
COL6A1P12109 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
COL6A1P12109 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC20.86■□□□□ 0.93
COL6A1P12109 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC20.86■□□□□ 0.93
COL6A1P12109 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC20.86■□□□□ 0.93
COL6A1P12109 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC20.86■□□□□ 0.93
COL6A1P12109 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC20.86■□□□□ 0.93
COL6A1P12109 AL773604.1-201ENST00000617417 272 ntBASIC20.86■□□□□ 0.93
COL6A1P12109 CCNC-219ENST00000627680 896 ntTSL 5 BASIC20.86■□□□□ 0.93
COL6A1P12109 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
COL6A1P12109 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
COL6A1P12109 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
COL6A1P12109 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
COL6A1P12109 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC20.85■□□□□ 0.93
COL6A1P12109 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC20.85■□□□□ 0.93
COL6A1P12109 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
COL6A1P12109 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC20.85■□□□□ 0.93
COL6A1P12109 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC20.85■□□□□ 0.93
COL6A1P12109 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
COL6A1P12109 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
COL6A1P12109 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
COL6A1P12109 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC20.85■□□□□ 0.93
COL6A1P12109 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC20.85■□□□□ 0.93
COL6A1P12109 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC20.85■□□□□ 0.93
COL6A1P12109 AP003733.1-201ENST00000491725 852 ntBASIC20.85■□□□□ 0.93
COL6A1P12109 MOK-208ENST00000519058 917 ntTSL 2 BASIC20.85■□□□□ 0.93
COL6A1P12109 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC20.85■□□□□ 0.93
COL6A1P12109 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC20.85■□□□□ 0.93
COL6A1P12109 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
COL6A1P12109 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC20.85■□□□□ 0.93
COL6A1P12109 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC20.85■□□□□ 0.93
COL6A1P12109 IGHV3OR16-7-201ENST00000604106 360 ntBASIC20.85■□□□□ 0.93
COL6A1P12109 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
COL6A1P12109 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC20.85■□□□□ 0.93
COL6A1P12109 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
COL6A1P12109 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
COL6A1P12109 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
COL6A1P12109 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC20.85■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 96.7 ms