Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
NPHP1O15259 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC23.82■■□□□ 1.4
NPHP1O15259 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
NPHP1O15259 PALM-208ENST00000592155 2272 ntTSL 4 BASIC23.82■■□□□ 1.4
NPHP1O15259 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC23.82■■□□□ 1.4
NPHP1O15259 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
NPHP1O15259 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
NPHP1O15259 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
NPHP1O15259 AC036111.1-201ENST00000533973 1582 ntBASIC23.82■■□□□ 1.4
NPHP1O15259 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
NPHP1O15259 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
NPHP1O15259 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
NPHP1O15259 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
NPHP1O15259 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC23.81■■□□□ 1.4
NPHP1O15259 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
NPHP1O15259 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
NPHP1O15259 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC23.81■■□□□ 1.4
NPHP1O15259 AC111152.3-201ENST00000569699 673 ntBASIC23.81■■□□□ 1.4
NPHP1O15259 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC23.81■■□□□ 1.4
NPHP1O15259 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
NPHP1O15259 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
NPHP1O15259 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
NPHP1O15259 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC23.81■■□□□ 1.4
NPHP1O15259 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
NPHP1O15259 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC23.81■■□□□ 1.4
NPHP1O15259 AC104417.2-201ENST00000562989 1793 ntBASIC23.8■■□□□ 1.4
NPHP1O15259 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
NPHP1O15259 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC23.8■■□□□ 1.4
NPHP1O15259 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
NPHP1O15259 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
NPHP1O15259 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC23.8■■□□□ 1.4
NPHP1O15259 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
NPHP1O15259 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
NPHP1O15259 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
NPHP1O15259 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC23.8■■□□□ 1.4
NPHP1O15259 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
NPHP1O15259 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC23.8■■□□□ 1.4
NPHP1O15259 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC23.8■■□□□ 1.4
NPHP1O15259 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC23.8■■□□□ 1.4
NPHP1O15259 RN7SL510P-201ENST00000581311 263 ntBASIC23.8■■□□□ 1.4
NPHP1O15259 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC23.8■■□□□ 1.4
NPHP1O15259 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC23.8■■□□□ 1.4
NPHP1O15259 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
NPHP1O15259 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
NPHP1O15259 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC23.8■■□□□ 1.4
NPHP1O15259 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC23.8■■□□□ 1.4
NPHP1O15259 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
NPHP1O15259 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
NPHP1O15259 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC23.8■■□□□ 1.4
NPHP1O15259 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
NPHP1O15259 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
NPHP1O15259 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
NPHP1O15259 GPAT2P1-201ENST00000444924 1672 ntBASIC23.79■■□□□ 1.4
NPHP1O15259 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
NPHP1O15259 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC23.79■■□□□ 1.4
NPHP1O15259 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
NPHP1O15259 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
NPHP1O15259 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
NPHP1O15259 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
NPHP1O15259 AC004870.1-201ENST00000315132 882 ntBASIC23.79■■□□□ 1.4
NPHP1O15259 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC23.79■■□□□ 1.4
NPHP1O15259 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC23.79■■□□□ 1.4
NPHP1O15259 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC23.79■■□□□ 1.4
NPHP1O15259 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC23.79■■□□□ 1.4
NPHP1O15259 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC23.79■■□□□ 1.4
NPHP1O15259 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
NPHP1O15259 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC23.79■■□□□ 1.4
NPHP1O15259 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC23.79■■□□□ 1.4
NPHP1O15259 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
NPHP1O15259 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC23.79■■□□□ 1.4
NPHP1O15259 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
NPHP1O15259 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
NPHP1O15259 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC23.79■■□□□ 1.4
NPHP1O15259 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
NPHP1O15259 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC23.78■■□□□ 1.4
NPHP1O15259 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
NPHP1O15259 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
NPHP1O15259 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC23.78■■□□□ 1.4
NPHP1O15259 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
NPHP1O15259 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
NPHP1O15259 RNF165-205ENST00000588679 2904 ntBASIC23.78■■□□□ 1.4
NPHP1O15259 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
NPHP1O15259 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
NPHP1O15259 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
NPHP1O15259 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
NPHP1O15259 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC23.78■■□□□ 1.4
NPHP1O15259 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC23.78■■□□□ 1.4
NPHP1O15259 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC23.78■■□□□ 1.4
NPHP1O15259 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC23.78■■□□□ 1.4
NPHP1O15259 ZNF815P-204ENST00000434898 1737 ntBASIC23.78■■□□□ 1.4
NPHP1O15259 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC23.78■■□□□ 1.4
NPHP1O15259 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
NPHP1O15259 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC23.78■■□□□ 1.4
NPHP1O15259 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC23.78■■□□□ 1.4
NPHP1O15259 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
NPHP1O15259 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC23.78■■□□□ 1.4
NPHP1O15259 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
NPHP1O15259 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC23.77■■□□□ 1.4
NPHP1O15259 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
NPHP1O15259 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms