Protein–RNA interactions for Protein: O14627

CDX4, Homeobox protein CDX-4, humanhuman

Predicted RBP Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX4O14627 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
CDX4O14627 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CDX4O14627 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CDX4O14627 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC18.25■□□□□ 0.51
CDX4O14627 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CDX4O14627 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CDX4O14627 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CDX4O14627 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CDX4O14627 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
CDX4O14627 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC18.25■□□□□ 0.51
CDX4O14627 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC18.25■□□□□ 0.51
CDX4O14627 AC092865.5-201ENST00000545435 363 ntBASIC18.25■□□□□ 0.51
CDX4O14627 AC104390.1-201ENST00000555663 520 ntBASIC18.25■□□□□ 0.51
CDX4O14627 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC18.25■□□□□ 0.51
CDX4O14627 AC010240.3-201ENST00000607688 395 ntBASIC18.25■□□□□ 0.51
CDX4O14627 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
CDX4O14627 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CDX4O14627 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CDX4O14627 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CDX4O14627 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CDX4O14627 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CDX4O14627 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CDX4O14627 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CDX4O14627 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
CDX4O14627 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CDX4O14627 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CDX4O14627 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC18.24■□□□□ 0.51
CDX4O14627 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC18.24■□□□□ 0.51
CDX4O14627 RN7SL606P-201ENST00000472779 293 ntBASIC18.24■□□□□ 0.51
CDX4O14627 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC18.24■□□□□ 0.51
CDX4O14627 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC18.24■□□□□ 0.51
CDX4O14627 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CDX4O14627 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC18.24■□□□□ 0.51
CDX4O14627 IGHV3OR16-7-201ENST00000604106 360 ntBASIC18.24■□□□□ 0.51
CDX4O14627 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
CDX4O14627 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC18.24■□□□□ 0.51
CDX4O14627 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
CDX4O14627 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
CDX4O14627 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CDX4O14627 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC18.24■□□□□ 0.51
CDX4O14627 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CDX4O14627 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
CDX4O14627 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CDX4O14627 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CDX4O14627 KRT8P7-201ENST00000533003 1432 ntBASIC18.23■□□□□ 0.51
CDX4O14627 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CDX4O14627 NSUN5P1-202ENST00000421140 1535 ntBASIC18.23■□□□□ 0.51
CDX4O14627 NSUN5P2-203ENST00000457352 1529 ntBASIC18.23■□□□□ 0.51
CDX4O14627 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CDX4O14627 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CDX4O14627 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
CDX4O14627 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CDX4O14627 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CDX4O14627 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CDX4O14627 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC18.23■□□□□ 0.51
CDX4O14627 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC18.23■□□□□ 0.51
CDX4O14627 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CDX4O14627 MIR1233-2-201ENST00000408138 82 ntBASIC18.23■□□□□ 0.51
CDX4O14627 MIR1233-1-201ENST00000408722 82 ntBASIC18.23■□□□□ 0.51
CDX4O14627 KRT18P23-201ENST00000435622 1283 ntBASIC18.23■□□□□ 0.51
CDX4O14627 FAM197Y8-203ENST00000450145 560 ntBASIC18.23■□□□□ 0.51
CDX4O14627 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
CDX4O14627 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC18.23■□□□□ 0.51
CDX4O14627 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC18.23■□□□□ 0.51
CDX4O14627 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC18.23■□□□□ 0.51
CDX4O14627 GPR32P1-201ENST00000601788 811 ntBASIC18.23■□□□□ 0.51
CDX4O14627 AL592071.1-201ENST00000611956 408 ntBASIC18.23■□□□□ 0.51
CDX4O14627 AC124864.1-201ENST00000623408 392 ntBASIC18.23■□□□□ 0.51
CDX4O14627 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CDX4O14627 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC18.23■□□□□ 0.51
CDX4O14627 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CDX4O14627 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CDX4O14627 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC18.23■□□□□ 0.51
CDX4O14627 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CDX4O14627 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
CDX4O14627 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CDX4O14627 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
CDX4O14627 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
CDX4O14627 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CDX4O14627 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
CDX4O14627 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CDX4O14627 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CDX4O14627 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
CDX4O14627 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC18.22■□□□□ 0.51
CDX4O14627 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
CDX4O14627 AL031284.1-201ENST00000419297 478 ntBASIC18.22■□□□□ 0.51
CDX4O14627 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC18.22■□□□□ 0.51
CDX4O14627 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC18.22■□□□□ 0.51
CDX4O14627 AC106730.1-201ENST00000566722 1090 ntBASIC18.22■□□□□ 0.51
CDX4O14627 AP005901.3-202ENST00000581653 237 ntBASIC18.22■□□□□ 0.51
CDX4O14627 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CDX4O14627 ABBA01031661.1-201ENST00000634362 1253 ntBASIC18.22■□□□□ 0.51
CDX4O14627 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CDX4O14627 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
CDX4O14627 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC18.22■□□□□ 0.51
CDX4O14627 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CDX4O14627 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC18.21■□□□□ 0.51
CDX4O14627 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
CDX4O14627 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
CDX4O14627 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC18.21■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms