Protein–RNA interactions for Protein: O00555

CACNA1A, Voltage-dependent P/Q-type calcium channel subunit alpha-1A, humanhuman

Predictions only

Length 2,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1AO00555 MIR4745-201ENST00000577608 62 ntBASIC17.83■□□□□ 0.45
CACNA1AO00555 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
CACNA1AO00555 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC17.83■□□□□ 0.45
CACNA1AO00555 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.45
CACNA1AO00555 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
CACNA1AO00555 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC17.83■□□□□ 0.45
CACNA1AO00555 CALM1-216ENST00000626705 1341 ntTSL 5 BASIC17.83■□□□□ 0.45
CACNA1AO00555 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC17.83■□□□□ 0.45
CACNA1AO00555 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.44
CACNA1AO00555 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CACNA1AO00555 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC17.83■□□□□ 0.44
CACNA1AO00555 GUSBP12-201ENST00000513727 720 ntBASIC17.83■□□□□ 0.44
CACNA1AO00555 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC17.83■□□□□ 0.44
CACNA1AO00555 GZMM-202ENST00000592501 941 ntTSL 3 BASIC17.83■□□□□ 0.44
CACNA1AO00555 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC17.83■□□□□ 0.44
CACNA1AO00555 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CACNA1AO00555 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
CACNA1AO00555 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CACNA1AO00555 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
CACNA1AO00555 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.44
CACNA1AO00555 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CACNA1AO00555 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC17.83■□□□□ 0.44
CACNA1AO00555 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CACNA1AO00555 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC17.82■□□□□ 0.44
CACNA1AO00555 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CACNA1AO00555 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC17.82■□□□□ 0.44
CACNA1AO00555 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CACNA1AO00555 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
CACNA1AO00555 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CACNA1AO00555 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CACNA1AO00555 GSAP-205ENST00000430584 600 ntTSL 5 BASIC17.82■□□□□ 0.44
CACNA1AO00555 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC17.82■□□□□ 0.44
CACNA1AO00555 AC021087.4-201ENST00000563761 564 ntBASIC17.82■□□□□ 0.44
CACNA1AO00555 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC17.82■□□□□ 0.44
CACNA1AO00555 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
CACNA1AO00555 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC17.82■□□□□ 0.44
CACNA1AO00555 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CACNA1AO00555 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC17.82■□□□□ 0.44
CACNA1AO00555 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
CACNA1AO00555 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CACNA1AO00555 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC17.81■□□□□ 0.44
CACNA1AO00555 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC17.81■□□□□ 0.44
CACNA1AO00555 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC17.81■□□□□ 0.44
CACNA1AO00555 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CACNA1AO00555 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
CACNA1AO00555 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC17.81■□□□□ 0.44
CACNA1AO00555 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC17.81■□□□□ 0.44
CACNA1AO00555 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
CACNA1AO00555 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC17.81■□□□□ 0.44
CACNA1AO00555 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC17.81■□□□□ 0.44
CACNA1AO00555 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC17.81■□□□□ 0.44
CACNA1AO00555 AC011840.4-201ENST00000578471 627 ntBASIC17.81■□□□□ 0.44
CACNA1AO00555 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC17.81■□□□□ 0.44
CACNA1AO00555 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
CACNA1AO00555 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC17.81■□□□□ 0.44
CACNA1AO00555 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CACNA1AO00555 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC17.81■□□□□ 0.44
CACNA1AO00555 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CACNA1AO00555 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CACNA1AO00555 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC17.8■□□□□ 0.44
CACNA1AO00555 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CACNA1AO00555 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC17.8■□□□□ 0.44
CACNA1AO00555 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
CACNA1AO00555 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
CACNA1AO00555 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
CACNA1AO00555 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CACNA1AO00555 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CACNA1AO00555 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC17.8■□□□□ 0.44
CACNA1AO00555 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
CACNA1AO00555 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
CACNA1AO00555 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CACNA1AO00555 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CACNA1AO00555 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC17.8■□□□□ 0.44
CACNA1AO00555 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC17.8■□□□□ 0.44
CACNA1AO00555 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC17.8■□□□□ 0.44
CACNA1AO00555 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CACNA1AO00555 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
CACNA1AO00555 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC17.8■□□□□ 0.44
CACNA1AO00555 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CACNA1AO00555 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CACNA1AO00555 OR8S1-201ENST00000310194 1080 ntBASIC17.8■□□□□ 0.44
CACNA1AO00555 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC17.8■□□□□ 0.44
CACNA1AO00555 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC17.8■□□□□ 0.44
CACNA1AO00555 AC025062.2-201ENST00000605477 670 ntBASIC17.8■□□□□ 0.44
CACNA1AO00555 AL078644.1-201ENST00000609881 752 ntBASIC17.8■□□□□ 0.44
CACNA1AO00555 C20orf181-201ENST00000623918 480 ntBASIC17.8■□□□□ 0.44
CACNA1AO00555 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CACNA1AO00555 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
CACNA1AO00555 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
CACNA1AO00555 TREX1-205ENST00000625293 1783 ntBASIC17.8■□□□□ 0.44
CACNA1AO00555 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CACNA1AO00555 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CACNA1AO00555 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC17.79■□□□□ 0.44
CACNA1AO00555 AP003733.1-201ENST00000491725 852 ntBASIC17.79■□□□□ 0.44
CACNA1AO00555 RPL28-205ENST00000558131 444 ntTSL 5 BASIC17.79■□□□□ 0.44
CACNA1AO00555 MIR3180-5-201ENST00000583743 153 ntBASIC17.79■□□□□ 0.44
CACNA1AO00555 AC005498.2-205ENST00000593218 784 ntBASIC17.79■□□□□ 0.44
CACNA1AO00555 MTDHP3-201ENST00000594186 672 ntBASIC17.79■□□□□ 0.44
CACNA1AO00555 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC17.79■□□□□ 0.44
CACNA1AO00555 MIR6799-201ENST00000620297 69 ntBASIC17.79■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 18.1 ms