Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC14.69□□□□□ -0.06
COL6A5A8TX70 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC14.69□□□□□ -0.06
COL6A5A8TX70 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC14.69□□□□□ -0.06
COL6A5A8TX70 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC14.69□□□□□ -0.06
COL6A5A8TX70 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.06
COL6A5A8TX70 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
COL6A5A8TX70 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC14.69□□□□□ -0.06
COL6A5A8TX70 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
COL6A5A8TX70 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
COL6A5A8TX70 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
COL6A5A8TX70 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL6A5A8TX70 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC14.68□□□□□ -0.06
COL6A5A8TX70 PMP22-202ENST00000395936 816 ntTSL 3 BASIC14.68□□□□□ -0.06
COL6A5A8TX70 METTL26-204ENST00000397665 558 ntTSL 2 BASIC14.68□□□□□ -0.06
COL6A5A8TX70 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
COL6A5A8TX70 COX5A-204ENST00000567270 579 ntTSL 3 BASIC14.68□□□□□ -0.06
COL6A5A8TX70 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC14.68□□□□□ -0.06
COL6A5A8TX70 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC14.68□□□□□ -0.06
COL6A5A8TX70 AC114341.1-201ENST00000618070 349 ntBASIC14.68□□□□□ -0.06
COL6A5A8TX70 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC14.68□□□□□ -0.06
COL6A5A8TX70 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL6A5A8TX70 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL6A5A8TX70 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL6A5A8TX70 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL6A5A8TX70 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL6A5A8TX70 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL6A5A8TX70 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL6A5A8TX70 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL6A5A8TX70 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
COL6A5A8TX70 HLA-V-201ENST00000429037 534 ntBASIC14.68□□□□□ -0.06
COL6A5A8TX70 AC007274.1-201ENST00000439805 662 ntBASIC14.68□□□□□ -0.06
COL6A5A8TX70 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC14.68□□□□□ -0.06
COL6A5A8TX70 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC14.68□□□□□ -0.06
COL6A5A8TX70 PAM16-208ENST00000573553 722 ntTSL 2 BASIC14.68□□□□□ -0.06
COL6A5A8TX70 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC14.68□□□□□ -0.06
COL6A5A8TX70 AC011840.4-201ENST00000578471 627 ntBASIC14.68□□□□□ -0.06
COL6A5A8TX70 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC14.68□□□□□ -0.06
COL6A5A8TX70 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC14.68□□□□□ -0.06
COL6A5A8TX70 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL6A5A8TX70 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL6A5A8TX70 TREX1-205ENST00000625293 1783 ntBASIC14.68□□□□□ -0.06
COL6A5A8TX70 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
COL6A5A8TX70 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL6A5A8TX70 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
COL6A5A8TX70 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
COL6A5A8TX70 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
COL6A5A8TX70 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
COL6A5A8TX70 AC005034.1-201ENST00000426657 489 ntBASIC14.67□□□□□ -0.06
COL6A5A8TX70 AC096582.2-201ENST00000510860 516 ntBASIC14.67□□□□□ -0.06
COL6A5A8TX70 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC14.67□□□□□ -0.06
COL6A5A8TX70 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
COL6A5A8TX70 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC14.67□□□□□ -0.06
COL6A5A8TX70 PLK5-205ENST00000642079 1969 ntBASIC14.67□□□□□ -0.06
COL6A5A8TX70 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
COL6A5A8TX70 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
COL6A5A8TX70 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
COL6A5A8TX70 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC14.67□□□□□ -0.06
COL6A5A8TX70 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC14.67□□□□□ -0.06
COL6A5A8TX70 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC14.67□□□□□ -0.06
COL6A5A8TX70 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC14.67□□□□□ -0.06
COL6A5A8TX70 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC14.67□□□□□ -0.06
COL6A5A8TX70 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC14.67□□□□□ -0.06
COL6A5A8TX70 Z83851.2-201ENST00000609564 659 ntBASIC14.67□□□□□ -0.06
COL6A5A8TX70 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
COL6A5A8TX70 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC14.67□□□□□ -0.06
COL6A5A8TX70 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
COL6A5A8TX70 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
COL6A5A8TX70 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
COL6A5A8TX70 ERF-202ENST00000440177 2032 ntTSL 2 BASIC14.66□□□□□ -0.06
COL6A5A8TX70 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
COL6A5A8TX70 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC14.66□□□□□ -0.06
COL6A5A8TX70 INO80C-206ENST00000586489 594 ntTSL 3 BASIC14.66□□□□□ -0.06
COL6A5A8TX70 AP001269.4-201ENST00000609611 512 ntBASIC14.66□□□□□ -0.06
COL6A5A8TX70 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
COL6A5A8TX70 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
COL6A5A8TX70 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC14.66□□□□□ -0.06
COL6A5A8TX70 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
COL6A5A8TX70 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
COL6A5A8TX70 FEM1AP1-201ENST00000431297 1995 ntBASIC14.66□□□□□ -0.06
COL6A5A8TX70 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
COL6A5A8TX70 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
COL6A5A8TX70 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
COL6A5A8TX70 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
COL6A5A8TX70 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC14.66□□□□□ -0.06
COL6A5A8TX70 ME2-208ENST00000638937 2471 ntTSL 5 BASIC14.66□□□□□ -0.06
COL6A5A8TX70 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
COL6A5A8TX70 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC14.66□□□□□ -0.06
COL6A5A8TX70 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC14.66□□□□□ -0.06
COL6A5A8TX70 RNA5SP416-201ENST00000516838 111 ntBASIC14.66□□□□□ -0.06
COL6A5A8TX70 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC14.66□□□□□ -0.06
COL6A5A8TX70 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
COL6A5A8TX70 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC14.66□□□□□ -0.06
COL6A5A8TX70 IGHV3-41-201ENST00000613121 348 ntBASIC14.66□□□□□ -0.06
COL6A5A8TX70 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
COL6A5A8TX70 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
COL6A5A8TX70 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
COL6A5A8TX70 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
COL6A5A8TX70 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
COL6A5A8TX70 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
COL6A5A8TX70 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 20 ms