Protein–RNA interactions for Protein: A0A0B4J275

TRAV17, T-cell receptor alpha variable 17 (Fragment), humanhuman

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV17A0A0B4J275 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
TRAV17A0A0B4J275 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC17.12■□□□□ 0.33
TRAV17A0A0B4J275 AC011498.5-201ENST00000592027 486 ntBASIC17.12■□□□□ 0.33
TRAV17A0A0B4J275 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC17.12■□□□□ 0.33
TRAV17A0A0B4J275 AL121672.3-201ENST00000608644 468 ntBASIC17.12■□□□□ 0.33
TRAV17A0A0B4J275 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC17.12■□□□□ 0.33
TRAV17A0A0B4J275 AL691432.3-201ENST00000621860 400 ntBASIC17.12■□□□□ 0.33
TRAV17A0A0B4J275 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TRAV17A0A0B4J275 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TRAV17A0A0B4J275 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC17.12■□□□□ 0.33
TRAV17A0A0B4J275 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
TRAV17A0A0B4J275 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
TRAV17A0A0B4J275 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC17.12■□□□□ 0.33
TRAV17A0A0B4J275 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TRAV17A0A0B4J275 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TRAV17A0A0B4J275 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TRAV17A0A0B4J275 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC17.12■□□□□ 0.33
TRAV17A0A0B4J275 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC17.12■□□□□ 0.33
TRAV17A0A0B4J275 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC17.12■□□□□ 0.33
TRAV17A0A0B4J275 KRT8P7-201ENST00000533003 1432 ntBASIC17.12■□□□□ 0.33
TRAV17A0A0B4J275 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC17.12■□□□□ 0.33
TRAV17A0A0B4J275 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC17.12■□□□□ 0.33
TRAV17A0A0B4J275 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TRAV17A0A0B4J275 KATNBL1P6-202ENST00000562413 1466 ntBASIC17.12■□□□□ 0.33
TRAV17A0A0B4J275 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC17.11■□□□□ 0.33
TRAV17A0A0B4J275 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRAV17A0A0B4J275 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRAV17A0A0B4J275 AL109659.2-201ENST00000606809 1674 ntBASIC17.11■□□□□ 0.33
TRAV17A0A0B4J275 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRAV17A0A0B4J275 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRAV17A0A0B4J275 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRAV17A0A0B4J275 BX276092.5-203ENST00000456199 560 ntBASIC17.11■□□□□ 0.33
TRAV17A0A0B4J275 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC17.11■□□□□ 0.33
TRAV17A0A0B4J275 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC17.11■□□□□ 0.33
TRAV17A0A0B4J275 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC17.11■□□□□ 0.33
TRAV17A0A0B4J275 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRAV17A0A0B4J275 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
TRAV17A0A0B4J275 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
TRAV17A0A0B4J275 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
TRAV17A0A0B4J275 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRAV17A0A0B4J275 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRAV17A0A0B4J275 LINC01521-201ENST00000504184 1943 ntBASIC17.11■□□□□ 0.33
TRAV17A0A0B4J275 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC17.11■□□□□ 0.33
TRAV17A0A0B4J275 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC17.11■□□□□ 0.33
TRAV17A0A0B4J275 TP73-202ENST00000354437 2140 ntTSL 5 BASIC17.11■□□□□ 0.33
TRAV17A0A0B4J275 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
TRAV17A0A0B4J275 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRAV17A0A0B4J275 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
TRAV17A0A0B4J275 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC17.1■□□□□ 0.33
TRAV17A0A0B4J275 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRAV17A0A0B4J275 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
TRAV17A0A0B4J275 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRAV17A0A0B4J275 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRAV17A0A0B4J275 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TRAV17A0A0B4J275 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRAV17A0A0B4J275 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC17.1■□□□□ 0.33
TRAV17A0A0B4J275 MIR3917-201ENST00000580971 93 ntBASIC17.1■□□□□ 0.33
TRAV17A0A0B4J275 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC17.1■□□□□ 0.33
TRAV17A0A0B4J275 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TRAV17A0A0B4J275 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRAV17A0A0B4J275 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TRAV17A0A0B4J275 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC17.1■□□□□ 0.33
TRAV17A0A0B4J275 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRAV17A0A0B4J275 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
TRAV17A0A0B4J275 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRAV17A0A0B4J275 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC17.1■□□□□ 0.33
TRAV17A0A0B4J275 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
TRAV17A0A0B4J275 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC17.1■□□□□ 0.33
TRAV17A0A0B4J275 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRAV17A0A0B4J275 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRAV17A0A0B4J275 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRAV17A0A0B4J275 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRAV17A0A0B4J275 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC17.09■□□□□ 0.33
TRAV17A0A0B4J275 TPM4P1-201ENST00000436100 807 ntBASIC17.09■□□□□ 0.33
TRAV17A0A0B4J275 TSSC2-201ENST00000450217 709 ntBASIC17.09■□□□□ 0.33
TRAV17A0A0B4J275 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC17.09■□□□□ 0.33
TRAV17A0A0B4J275 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC17.09■□□□□ 0.33
TRAV17A0A0B4J275 AL121894.2-201ENST00000602977 491 ntBASIC17.09■□□□□ 0.33
TRAV17A0A0B4J275 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC17.09■□□□□ 0.33
TRAV17A0A0B4J275 NPAP1P7-201ENST00000613027 823 ntBASIC17.09■□□□□ 0.33
TRAV17A0A0B4J275 SPEG-225ENST00000617028 815 ntTSL 5 BASIC17.09■□□□□ 0.33
TRAV17A0A0B4J275 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC17.09■□□□□ 0.33
TRAV17A0A0B4J275 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRAV17A0A0B4J275 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TRAV17A0A0B4J275 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRAV17A0A0B4J275 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TRAV17A0A0B4J275 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TRAV17A0A0B4J275 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC17.09■□□□□ 0.33
TRAV17A0A0B4J275 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TRAV17A0A0B4J275 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC17.09■□□□□ 0.33
TRAV17A0A0B4J275 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRAV17A0A0B4J275 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.33
TRAV17A0A0B4J275 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
TRAV17A0A0B4J275 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
TRAV17A0A0B4J275 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
TRAV17A0A0B4J275 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
TRAV17A0A0B4J275 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC17.08■□□□□ 0.33
TRAV17A0A0B4J275 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC17.08■□□□□ 0.33
TRAV17A0A0B4J275 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
TRAV17A0A0B4J275 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 20.8 ms