Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC3.2□□□□□ -1.9
SMC1BQ8NDV3 RPL30P4-201ENST00000429309 333 ntBASIC3.2□□□□□ -1.9
SMC1BQ8NDV3 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC3.2□□□□□ -1.9
SMC1BQ8NDV3 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC3.2□□□□□ -1.9
SMC1BQ8NDV3 AC004817.2-201ENST00000561794 651 ntBASIC3.2□□□□□ -1.9
SMC1BQ8NDV3 MIR1273D-201ENST00000577266 86 ntBASIC3.2□□□□□ -1.9
SMC1BQ8NDV3 AC105245.1-201ENST00000581934 244 ntBASIC3.2□□□□□ -1.9
SMC1BQ8NDV3 AC069294.1-201ENST00000608397 350 ntBASIC3.2□□□□□ -1.9
SMC1BQ8NDV3 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
SMC1BQ8NDV3 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC3.2□□□□□ -1.9
SMC1BQ8NDV3 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
SMC1BQ8NDV3 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC3.2□□□□□ -1.9
SMC1BQ8NDV3 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC3.2□□□□□ -1.9
SMC1BQ8NDV3 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
SMC1BQ8NDV3 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC3.19□□□□□ -1.9
SMC1BQ8NDV3 Y_RNA.19-201ENST00000362462 99 ntBASIC3.19□□□□□ -1.9
SMC1BQ8NDV3 RNU6-926P-201ENST00000384075 107 ntBASIC3.19□□□□□ -1.9
SMC1BQ8NDV3 RNU6-793P-201ENST00000384233 104 ntBASIC3.19□□□□□ -1.9
SMC1BQ8NDV3 MIR329-1-201ENST00000385028 80 ntBASIC3.19□□□□□ -1.9
SMC1BQ8NDV3 MRPL35P1-201ENST00000404272 572 ntBASIC3.19□□□□□ -1.9
SMC1BQ8NDV3 RNU6-1328P-201ENST00000410938 106 ntBASIC3.19□□□□□ -1.9
SMC1BQ8NDV3 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC3.19□□□□□ -1.9
SMC1BQ8NDV3 AC108729.3-201ENST00000513484 108 ntBASIC3.19□□□□□ -1.9
SMC1BQ8NDV3 Y_RNA.683-201ENST00000516508 93 ntBASIC3.19□□□□□ -1.9
SMC1BQ8NDV3 AC005562.2-201ENST00000618264 111 ntBASIC3.19□□□□□ -1.9
SMC1BQ8NDV3 U6.104-201ENST00000637979 90 ntBASIC3.19□□□□□ -1.9
SMC1BQ8NDV3 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC3.19□□□□□ -1.9
SMC1BQ8NDV3 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC3.18□□□□□ -1.9
SMC1BQ8NDV3 RNU1-62P-201ENST00000362599 164 ntBASIC3.18□□□□□ -1.9
SMC1BQ8NDV3 Y_RNA.140-201ENST00000363474 103 ntBASIC3.18□□□□□ -1.9
SMC1BQ8NDV3 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC3.18□□□□□ -1.9
SMC1BQ8NDV3 RNU6-26P-201ENST00000383985 107 ntBASIC3.18□□□□□ -1.9
SMC1BQ8NDV3 RNU6-1145P-201ENST00000384246 107 ntBASIC3.18□□□□□ -1.9
SMC1BQ8NDV3 RNU6-574P-201ENST00000384265 107 ntBASIC3.18□□□□□ -1.9
SMC1BQ8NDV3 RNU6-130P-201ENST00000411112 103 ntBASIC3.18□□□□□ -1.9
SMC1BQ8NDV3 AC007064.1-201ENST00000412238 351 ntBASIC3.18□□□□□ -1.9
SMC1BQ8NDV3 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC3.18□□□□□ -1.9
SMC1BQ8NDV3 AC027124.2-201ENST00000428249 105 ntBASIC3.18□□□□□ -1.9
SMC1BQ8NDV3 RPL23AP58-201ENST00000440453 469 ntBASIC3.18□□□□□ -1.9
SMC1BQ8NDV3 RNU6-1053P-201ENST00000515930 101 ntBASIC3.18□□□□□ -1.9
SMC1BQ8NDV3 RNA5SP282-201ENST00000516355 108 ntBASIC3.18□□□□□ -1.9
SMC1BQ8NDV3 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC3.18□□□□□ -1.9
SMC1BQ8NDV3 RPL17P51-201ENST00000605218 238 ntBASIC3.18□□□□□ -1.9
SMC1BQ8NDV3 TCL6_2.1-201ENST00000615162 119 ntBASIC3.18□□□□□ -1.9
SMC1BQ8NDV3 AC011476.5-201ENST00000615594 130 ntBASIC3.18□□□□□ -1.9
SMC1BQ8NDV3 U4.3-201ENST00000621047 82 ntBASIC3.18□□□□□ -1.9
SMC1BQ8NDV3 TTK-211ENST00000627129 240 ntTSL 5 BASIC3.18□□□□□ -1.9
SMC1BQ8NDV3 NAA50-211ENST00000630058 177 ntTSL 5 BASIC3.18□□□□□ -1.9
SMC1BQ8NDV3 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
SMC1BQ8NDV3 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
SMC1BQ8NDV3 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC3.18□□□□□ -1.9
SMC1BQ8NDV3 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC3.18□□□□□ -1.9
SMC1BQ8NDV3 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC3.17□□□□□ -1.9
SMC1BQ8NDV3 RNU6-702P-201ENST00000364982 107 ntBASIC3.17□□□□□ -1.9
SMC1BQ8NDV3 Y_RNA.401-201ENST00000383965 117 ntBASIC3.17□□□□□ -1.9
SMC1BQ8NDV3 MIR549A-201ENST00000385268 96 ntBASIC3.17□□□□□ -1.9
SMC1BQ8NDV3 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC3.17□□□□□ -1.9
SMC1BQ8NDV3 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
SMC1BQ8NDV3 AC023141.11-201ENST00000508864 202 ntBASIC3.17□□□□□ -1.9
SMC1BQ8NDV3 RNU6-56P-201ENST00000516986 93 ntBASIC3.17□□□□□ -1.9
SMC1BQ8NDV3 AC018904.1-201ENST00000560594 542 ntTSL 3 BASIC3.17□□□□□ -1.9
SMC1BQ8NDV3 AP000942.3-201ENST00000603702 160 ntBASIC3.17□□□□□ -1.9
SMC1BQ8NDV3 CENPF-206ENST00000614578 528 ntTSL 5 BASIC3.17□□□□□ -1.9
SMC1BQ8NDV3 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
SMC1BQ8NDV3 MTND5P35-201ENST00000557537 1720 ntBASIC3.16□□□□□ -1.9
SMC1BQ8NDV3 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC3.16□□□□□ -1.9
SMC1BQ8NDV3 AC007395.1-201ENST00000451333 677 ntBASIC3.16□□□□□ -1.9
SMC1BQ8NDV3 PCNPP5-201ENST00000452246 481 ntBASIC3.16□□□□□ -1.9
SMC1BQ8NDV3 AC080013.2-201ENST00000460866 323 ntBASIC3.16□□□□□ -1.9
SMC1BQ8NDV3 RPL23AP42-201ENST00000471152 471 ntBASIC3.16□□□□□ -1.9
SMC1BQ8NDV3 RN7SKP43-201ENST00000516173 320 ntBASIC3.16□□□□□ -1.9
SMC1BQ8NDV3 RNU6-586P-201ENST00000517265 104 ntBASIC3.16□□□□□ -1.9
SMC1BQ8NDV3 AC023824.2-201ENST00000566185 400 ntBASIC3.16□□□□□ -1.9
SMC1BQ8NDV3 MYL12BP1-201ENST00000569826 507 ntBASIC3.16□□□□□ -1.9
SMC1BQ8NDV3 MIR8062-201ENST00000621515 85 ntBASIC3.16□□□□□ -1.9
SMC1BQ8NDV3 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.9
SMC1BQ8NDV3 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC3.15□□□□□ -1.9
SMC1BQ8NDV3 Y_RNA.143-201ENST00000363520 106 ntBASIC3.15□□□□□ -1.91
SMC1BQ8NDV3 Y_RNA.193-201ENST00000363979 102 ntBASIC3.15□□□□□ -1.91
SMC1BQ8NDV3 SNORA18.2-201ENST00000383865 132 ntBASIC3.15□□□□□ -1.91
SMC1BQ8NDV3 SNORA12-201ENST00000391162 147 ntBASIC3.15□□□□□ -1.91
SMC1BQ8NDV3 MIR1302-6-201ENST00000408466 90 ntBASIC3.15□□□□□ -1.91
SMC1BQ8NDV3 Y_RNA.597-201ENST00000410463 100 ntBASIC3.15□□□□□ -1.91
SMC1BQ8NDV3 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC3.15□□□□□ -1.91
SMC1BQ8NDV3 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC3.15□□□□□ -1.91
SMC1BQ8NDV3 AC004386.2-201ENST00000441858 148 ntBASIC3.15□□□□□ -1.91
SMC1BQ8NDV3 RPL39P40-201ENST00000445481 146 ntBASIC3.15□□□□□ -1.91
SMC1BQ8NDV3 SNORA40.9-201ENST00000515895 93 ntBASIC3.15□□□□□ -1.91
SMC1BQ8NDV3 RNA5SP320-201ENST00000516263 124 ntBASIC3.15□□□□□ -1.91
SMC1BQ8NDV3 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC3.15□□□□□ -1.91
SMC1BQ8NDV3 MIR4498-201ENST00000577599 66 ntBASIC3.15□□□□□ -1.91
SMC1BQ8NDV3 MIR5006-201ENST00000583027 110 ntBASIC3.15□□□□□ -1.91
SMC1BQ8NDV3 MIR4781-201ENST00000585250 76 ntBASIC3.15□□□□□ -1.91
SMC1BQ8NDV3 AL713866.2-201ENST00000603579 219 ntBASIC3.15□□□□□ -1.91
SMC1BQ8NDV3 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC3.15□□□□□ -1.91
SMC1BQ8NDV3 MIR376A1-201ENST00000616574 68 ntBASIC3.15□□□□□ -1.91
SMC1BQ8NDV3 MIR5739-201ENST00000619803 80 ntBASIC3.15□□□□□ -1.91
SMC1BQ8NDV3 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
SMC1BQ8NDV3 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC3.15□□□□□ -1.91
SMC1BQ8NDV3 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC3.15□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 102.6 ms