Protein–RNA interactions for Protein: P48066

SLC6A11, Sodium- and chloride-dependent GABA transporter 3, humanhuman

Predictions only

Length 632 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC6A11P48066 MIR4308-201ENST00000580634 81 ntBASIC3.25□□□□□ -1.89
SLC6A11P48066 MIR3910-1-201ENST00000580936 111 ntBASIC3.25□□□□□ -1.89
SLC6A11P48066 AC104465.1-201ENST00000611365 139 ntBASIC3.25□□□□□ -1.89
SLC6A11P48066 AL365265.1-201ENST00000621045 234 ntBASIC3.25□□□□□ -1.89
SLC6A11P48066 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
SLC6A11P48066 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
SLC6A11P48066 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC3.24□□□□□ -1.89
SLC6A11P48066 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC3.24□□□□□ -1.89
SLC6A11P48066 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC3.24□□□□□ -1.89
SLC6A11P48066 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC3.24□□□□□ -1.89
SLC6A11P48066 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC3.24□□□□□ -1.89
SLC6A11P48066 RNU6-1272P-201ENST00000362776 107 ntBASIC3.24□□□□□ -1.89
SLC6A11P48066 RNU6-1248P-201ENST00000391096 64 ntBASIC3.24□□□□□ -1.89
SLC6A11P48066 SNORA12-201ENST00000391162 147 ntBASIC3.24□□□□□ -1.89
SLC6A11P48066 HIST1H2APS3-201ENST00000403259 134 ntBASIC3.24□□□□□ -1.89
SLC6A11P48066 RNU6ATAC19P-201ENST00000408096 110 ntBASIC3.24□□□□□ -1.89
SLC6A11P48066 OOSP1P1-201ENST00000423265 274 ntBASIC3.24□□□□□ -1.89
SLC6A11P48066 ARF4P2-201ENST00000430209 526 ntBASIC3.24□□□□□ -1.89
SLC6A11P48066 AC025750.2-201ENST00000442609 450 ntBASIC3.24□□□□□ -1.89
SLC6A11P48066 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC3.24□□□□□ -1.89
SLC6A11P48066 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
SLC6A11P48066 HMGB3P3-201ENST00000510526 400 ntBASIC3.24□□□□□ -1.89
SLC6A11P48066 RNU6-1219P-201ENST00000516143 112 ntBASIC3.24□□□□□ -1.89
SLC6A11P48066 SNORD59.2-201ENST00000516873 68 ntBASIC3.24□□□□□ -1.89
SLC6A11P48066 MIR5047-201ENST00000579212 100 ntBASIC3.24□□□□□ -1.89
SLC6A11P48066 AL670379.2-201ENST00000604983 252 ntBASIC3.24□□□□□ -1.89
SLC6A11P48066 uc_338.25-201ENST00000613756 156 ntBASIC3.24□□□□□ -1.89
SLC6A11P48066 AL137790.1-201ENST00000634283 177 ntBASIC3.24□□□□□ -1.89
SLC6A11P48066 U6.106-201ENST00000636360 105 ntBASIC3.24□□□□□ -1.89
SLC6A11P48066 AC058791.1-201ENST00000608412 3198 ntBASIC3.24□□□□□ -1.89
SLC6A11P48066 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC3.24□□□□□ -1.89
SLC6A11P48066 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
SLC6A11P48066 EVI5-201ENST00000370331 7403 ntAPPRIS P3 TSL 1 (best) BASIC3.24□□□□□ -1.89
SLC6A11P48066 AC069528.2-201ENST00000624849 1991 ntBASIC3.23□□□□□ -1.89
SLC6A11P48066 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC3.23□□□□□ -1.89
SLC6A11P48066 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC3.23□□□□□ -1.89
SLC6A11P48066 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
SLC6A11P48066 PWAR6-201ENST00000552334 4618 ntBASIC3.23□□□□□ -1.89
SLC6A11P48066 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC3.23□□□□□ -1.89
SLC6A11P48066 Y_RNA.170-201ENST00000363746 110 ntBASIC3.23□□□□□ -1.89
SLC6A11P48066 Y_RNA.304-201ENST00000365011 112 ntBASIC3.23□□□□□ -1.89
SLC6A11P48066 U3.40-201ENST00000408706 208 ntBASIC3.23□□□□□ -1.89
SLC6A11P48066 Z98742.2-201ENST00000431564 187 ntBASIC3.23□□□□□ -1.89
SLC6A11P48066 AC010401.1-201ENST00000463867 348 ntBASIC3.23□□□□□ -1.89
SLC6A11P48066 RNU6-344P-201ENST00000516635 111 ntBASIC3.23□□□□□ -1.89
SLC6A11P48066 RNU2-44P-201ENST00000516795 194 ntBASIC3.23□□□□□ -1.89
SLC6A11P48066 RNU2-12P-201ENST00000517216 168 ntBASIC3.23□□□□□ -1.89
SLC6A11P48066 AL008718.3-201ENST00000610217 321 ntBASIC3.23□□□□□ -1.89
SLC6A11P48066 AC068205.3-201ENST00000636385 468 ntBASIC3.23□□□□□ -1.89
SLC6A11P48066 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC3.23□□□□□ -1.89
SLC6A11P48066 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
SLC6A11P48066 LUZP2-208ENST00000620308 4981 ntTSL 5 BASIC3.23□□□□□ -1.89
SLC6A11P48066 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
SLC6A11P48066 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC3.22□□□□□ -1.89
SLC6A11P48066 AC026241.1-201ENST00000517873 2142 ntBASIC3.22□□□□□ -1.89
SLC6A11P48066 RNU6-454P-201ENST00000364292 107 ntBASIC3.22□□□□□ -1.89
SLC6A11P48066 Y_RNA.240-201ENST00000364469 95 ntBASIC3.22□□□□□ -1.89
SLC6A11P48066 RNU6-804P-201ENST00000384286 107 ntBASIC3.22□□□□□ -1.89
SLC6A11P48066 AL357139.1-201ENST00000407792 426 ntBASIC3.22□□□□□ -1.89
SLC6A11P48066 CST9LP2-201ENST00000437612 320 ntBASIC3.22□□□□□ -1.89
SLC6A11P48066 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC3.22□□□□□ -1.89
SLC6A11P48066 AC091179.1-201ENST00000461606 579 ntBASIC3.22□□□□□ -1.89
SLC6A11P48066 RN7SL330P-201ENST00000469709 307 ntBASIC3.22□□□□□ -1.89
SLC6A11P48066 RNU6-436P-201ENST00000516171 114 ntBASIC3.22□□□□□ -1.89
SLC6A11P48066 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC3.22□□□□□ -1.89
SLC6A11P48066 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC3.22□□□□□ -1.89
SLC6A11P48066 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
SLC6A11P48066 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC3.21□□□□□ -1.9
SLC6A11P48066 RNU1-105P-201ENST00000363470 161 ntBASIC3.21□□□□□ -1.9
SLC6A11P48066 SNORA54-201ENST00000384281 123 ntBASIC3.21□□□□□ -1.9
SLC6A11P48066 AC140059.1-201ENST00000489238 361 ntBASIC3.21□□□□□ -1.9
SLC6A11P48066 RPL23AP94-201ENST00000512518 302 ntBASIC3.21□□□□□ -1.9
SLC6A11P48066 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC3.21□□□□□ -1.9
SLC6A11P48066 MRPS18CP4-201ENST00000535821 231 ntBASIC3.21□□□□□ -1.9
SLC6A11P48066 AC079598.5-201ENST00000547460 117 ntBASIC3.21□□□□□ -1.9
SLC6A11P48066 AC009127.3-201ENST00000570531 403 ntBASIC3.21□□□□□ -1.9
SLC6A11P48066 uc_338.14-201ENST00000613162 166 ntBASIC3.21□□□□□ -1.9
SLC6A11P48066 hsa-mir-4536-1.1-201ENST00000636519 88 ntBASIC3.21□□□□□ -1.9
SLC6A11P48066 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC3.21□□□□□ -1.9
SLC6A11P48066 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
SLC6A11P48066 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC3.21□□□□□ -1.9
SLC6A11P48066 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC3.2□□□□□ -1.9
SLC6A11P48066 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC3.2□□□□□ -1.9
SLC6A11P48066 RNU1-75P-201ENST00000347264 129 ntBASIC3.2□□□□□ -1.9
SLC6A11P48066 RNU6-653P-201ENST00000363074 106 ntBASIC3.2□□□□□ -1.9
SLC6A11P48066 Y_RNA.510-201ENST00000384511 114 ntBASIC3.2□□□□□ -1.9
SLC6A11P48066 SNORA40.19-201ENST00000390846 128 ntBASIC3.2□□□□□ -1.9
SLC6A11P48066 RNA5SP354-201ENST00000391247 136 ntBASIC3.2□□□□□ -1.9
SLC6A11P48066 RNA5SP504-201ENST00000410676 117 ntBASIC3.2□□□□□ -1.9
SLC6A11P48066 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC3.2□□□□□ -1.9
SLC6A11P48066 AC006539.3-201ENST00000454258 129 ntBASIC3.2□□□□□ -1.9
SLC6A11P48066 TRAPPC2P7-201ENST00000509650 231 ntBASIC3.2□□□□□ -1.9
SLC6A11P48066 IGKV1OR2-6-201ENST00000603485 277 ntBASIC3.2□□□□□ -1.9
SLC6A11P48066 AC090517.3-201ENST00000625170 141 ntBASIC3.2□□□□□ -1.9
SLC6A11P48066 AL021368.2-201ENST00000606125 5352 ntBASIC3.2□□□□□ -1.9
SLC6A11P48066 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
SLC6A11P48066 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC3.2□□□□□ -1.9
SLC6A11P48066 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC3.2□□□□□ -1.9
SLC6A11P48066 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC3.2□□□□□ -1.9
SLC6A11P48066 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 108.4 ms