Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 RN7SL542P-201ENST00000467147 294 ntBASIC3.82□□□□□ -1.8
MSX1P28360 RNU1-45P-201ENST00000517191 141 ntBASIC3.82□□□□□ -1.8
MSX1P28360 IGLV3-26-201ENST00000520756 302 ntBASIC3.82□□□□□ -1.8
MSX1P28360 AP000867.2-201ENST00000532468 320 ntBASIC3.82□□□□□ -1.8
MSX1P28360 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC3.82□□□□□ -1.8
MSX1P28360 AC008739.2-201ENST00000597006 317 ntBASIC3.82□□□□□ -1.8
MSX1P28360 AL929325.1-201ENST00000603096 117 ntBASIC3.82□□□□□ -1.8
MSX1P28360 MIR6867-201ENST00000610636 67 ntBASIC3.82□□□□□ -1.8
MSX1P28360 uc_338.14-201ENST00000613162 166 ntBASIC3.82□□□□□ -1.8
MSX1P28360 AC010680.1-201ENST00000590024 3590 ntBASIC3.82□□□□□ -1.8
MSX1P28360 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC3.82□□□□□ -1.8
MSX1P28360 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
MSX1P28360 AC006504.1-201ENST00000562493 3666 ntBASIC3.82□□□□□ -1.8
MSX1P28360 AF117829.1-206ENST00000621883 3802 ntBASIC3.81□□□□□ -1.8
MSX1P28360 ETV1-202ENST00000399357 6096 ntTSL 2 BASIC3.81□□□□□ -1.8
MSX1P28360 C6orf10-209ENST00000612031 2179 ntAPPRIS ALT2 TSL 5 BASIC3.81□□□□□ -1.8
MSX1P28360 Y_RNA.203-201ENST00000364106 102 ntBASIC3.81□□□□□ -1.8
MSX1P28360 Y_RNA.281-201ENST00000364774 94 ntBASIC3.81□□□□□ -1.8
MSX1P28360 RNU6-117P-201ENST00000365415 107 ntBASIC3.81□□□□□ -1.8
MSX1P28360 MIR29B2-201ENST00000385055 81 ntBASIC3.81□□□□□ -1.8
MSX1P28360 MIR624-201ENST00000385217 97 ntBASIC3.81□□□□□ -1.8
MSX1P28360 LINC02337-201ENST00000401043 374 ntTSL 3 BASIC3.81□□□□□ -1.8
MSX1P28360 AL138878.1-201ENST00000405131 347 ntBASIC3.81□□□□□ -1.8
MSX1P28360 RNA5SP127-201ENST00000411051 133 ntBASIC3.81□□□□□ -1.8
MSX1P28360 RNU6-57P-201ENST00000411348 103 ntBASIC3.81□□□□□ -1.8
MSX1P28360 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC3.81□□□□□ -1.8
MSX1P28360 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC3.81□□□□□ -1.8
MSX1P28360 NDUFB1P1-201ENST00000435191 180 ntBASIC3.81□□□□□ -1.8
MSX1P28360 snoU13.22-201ENST00000459428 104 ntBASIC3.81□□□□□ -1.8
MSX1P28360 AC080013.2-201ENST00000460866 323 ntBASIC3.81□□□□□ -1.8
MSX1P28360 AC107934.2-201ENST00000518653 310 ntBASIC3.81□□□□□ -1.8
MSX1P28360 AC084398.2-201ENST00000551918 564 ntTSL 4 BASIC3.81□□□□□ -1.8
MSX1P28360 RN7SL600P-201ENST00000581811 299 ntBASIC3.81□□□□□ -1.8
MSX1P28360 AC011524.1-201ENST00000590167 240 ntTSL 3 BASIC3.81□□□□□ -1.8
MSX1P28360 AC002076.2-201ENST00000617362 122 ntBASIC3.81□□□□□ -1.8
MSX1P28360 AC006435.5-201ENST00000624486 112 ntBASIC3.81□□□□□ -1.8
MSX1P28360 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
MSX1P28360 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC3.81□□□□□ -1.8
MSX1P28360 RANBP2-201ENST00000283195 11711 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
MSX1P28360 AC114316.2-202ENST00000502934 2957 ntTSL 2 BASIC3.81□□□□□ -1.8
MSX1P28360 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC3.81□□□□□ -1.8
MSX1P28360 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
MSX1P28360 WHAMMP2-201ENST00000512149 5482 ntTSL 5 BASIC3.8□□□□□ -1.8
MSX1P28360 SNORD73B-201ENST00000364394 72 ntBASIC3.8□□□□□ -1.8
MSX1P28360 RNU6-554P-201ENST00000410466 106 ntBASIC3.8□□□□□ -1.8
MSX1P28360 HLA-N-201ENST00000437516 135 ntBASIC3.8□□□□□ -1.8
MSX1P28360 MTATP6P21-201ENST00000440681 189 ntBASIC3.8□□□□□ -1.8
MSX1P28360 AL162151.2-201ENST00000448875 158 ntBASIC3.8□□□□□ -1.8
MSX1P28360 RPL27AP5-201ENST00000469428 449 ntBASIC3.8□□□□□ -1.8
MSX1P28360 RN7SL585P-201ENST00000470538 280 ntBASIC3.8□□□□□ -1.8
MSX1P28360 RNU6-126P-201ENST00000516685 103 ntBASIC3.8□□□□□ -1.8
MSX1P28360 RNU1-104P-201ENST00000517280 175 ntBASIC3.8□□□□□ -1.8
MSX1P28360 AL163973.3-201ENST00000547093 430 ntTSL 3 BASIC3.8□□□□□ -1.8
MSX1P28360 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC3.8□□□□□ -1.8
MSX1P28360 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC3.8□□□□□ -1.8
MSX1P28360 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
MSX1P28360 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC3.8□□□□□ -1.8
MSX1P28360 ADGRG2-201ENST00000340581 3594 ntTSL 2 BASIC3.79□□□□□ -1.8
MSX1P28360 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
MSX1P28360 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
MSX1P28360 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC3.79□□□□□ -1.8
MSX1P28360 SNORA60-201ENST00000362396 134 ntBASIC3.79□□□□□ -1.8
MSX1P28360 Y_RNA.111-201ENST00000363248 100 ntBASIC3.79□□□□□ -1.8
MSX1P28360 SNORD74.4-201ENST00000364129 80 ntBASIC3.79□□□□□ -1.8
MSX1P28360 CYCSP19-201ENST00000411715 316 ntBASIC3.79□□□□□ -1.8
MSX1P28360 AC245102.2-201ENST00000448956 180 ntBASIC3.79□□□□□ -1.8
MSX1P28360 AL021397.1-201ENST00000451806 248 ntBASIC3.79□□□□□ -1.8
MSX1P28360 SNORD11-201ENST00000459124 84 ntBASIC3.79□□□□□ -1.8
MSX1P28360 RNA5SP309-201ENST00000516670 106 ntBASIC3.79□□□□□ -1.8
MSX1P28360 RNA5SP143-201ENST00000516936 115 ntBASIC3.79□□□□□ -1.8
MSX1P28360 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC3.79□□□□□ -1.8
MSX1P28360 AC244505.7-201ENST00000599675 272 ntBASIC3.79□□□□□ -1.8
MSX1P28360 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC3.79□□□□□ -1.8
MSX1P28360 ZNF266-203ENST00000588933 3293 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
MSX1P28360 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC3.79□□□□□ -1.8
MSX1P28360 NR5A2-201ENST00000236914 3115 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
MSX1P28360 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
MSX1P28360 MGAT4A-204ENST00000414521 3709 ntTSL 2 BASIC3.79□□□□□ -1.8
MSX1P28360 BAZ2B-202ENST00000343439 2364 ntTSL 5 BASIC3.78□□□□□ -1.8
MSX1P28360 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC3.78□□□□□ -1.8
MSX1P28360 PLCL2-202ENST00000432376 3940 ntAPPRIS P3 TSL 1 (best) BASIC3.78□□□□□ -1.8
MSX1P28360 AL136360.1-201ENST00000503377 1900 ntBASIC3.78□□□□□ -1.8
MSX1P28360 RNU6-905P-201ENST00000384434 107 ntBASIC3.78□□□□□ -1.8
MSX1P28360 MIR1294-201ENST00000408503 142 ntBASIC3.78□□□□□ -1.8
MSX1P28360 AC097463.2-201ENST00000421074 142 ntBASIC3.78□□□□□ -1.8
MSX1P28360 EIF4EP4-201ENST00000424916 578 ntBASIC3.78□□□□□ -1.8
MSX1P28360 AC063976.3-201ENST00000426849 329 ntBASIC3.78□□□□□ -1.8
MSX1P28360 AF228730.3-201ENST00000436691 102 ntBASIC3.78□□□□□ -1.8
MSX1P28360 RN7SL271P-201ENST00000487601 295 ntBASIC3.78□□□□□ -1.8
MSX1P28360 MIR449C-201ENST00000516047 92 ntBASIC3.78□□□□□ -1.8
MSX1P28360 IGKV1-22-201ENST00000524313 326 ntBASIC3.78□□□□□ -1.8
MSX1P28360 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC3.78□□□□□ -1.8
MSX1P28360 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC3.78□□□□□ -1.8
MSX1P28360 MIR4662B-201ENST00000579498 81 ntBASIC3.78□□□□□ -1.8
MSX1P28360 MIR4444-1-201ENST00000581696 74 ntBASIC3.78□□□□□ -1.8
MSX1P28360 MIR4444-2-201ENST00000584390 74 ntBASIC3.78□□□□□ -1.8
MSX1P28360 AL365205.2-201ENST00000594586 68 ntBASIC3.78□□□□□ -1.8
MSX1P28360 Pinc.1-201ENST00000616452 154 ntBASIC3.78□□□□□ -1.8
MSX1P28360 MIR6875-201ENST00000617506 72 ntBASIC3.78□□□□□ -1.8
MSX1P28360 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC3.78□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 159.7 ms