Protein–RNA interactions for Protein: Q9Y239

NOD1, Nucleotide-binding oligomerization domain-containing protein 1, humanhuman

Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NOD1Q9Y239 AC090877.1-201ENST00000561418 344 ntBASIC4.12□□□□□ -1.75
NOD1Q9Y239 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC4.12□□□□□ -1.75
NOD1Q9Y239 AC090517.3-201ENST00000625170 141 ntBASIC4.12□□□□□ -1.75
NOD1Q9Y239 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
NOD1Q9Y239 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
NOD1Q9Y239 AC019117.3-201ENST00000637807 3523 ntAPPRIS P1 TSL 5 BASIC4.12□□□□□ -1.75
NOD1Q9Y239 AL513302.2-201ENST00000562313 1842 ntBASIC4.11□□□□□ -1.75
NOD1Q9Y239 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
NOD1Q9Y239 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
NOD1Q9Y239 MIR367-201ENST00000362299 68 ntBASIC4.11□□□□□ -1.75
NOD1Q9Y239 RNU1-105P-201ENST00000363470 161 ntBASIC4.11□□□□□ -1.75
NOD1Q9Y239 Y_RNA.172-201ENST00000363765 102 ntBASIC4.11□□□□□ -1.75
NOD1Q9Y239 Y_RNA.229-201ENST00000364347 113 ntBASIC4.11□□□□□ -1.75
NOD1Q9Y239 Y_RNA.629-201ENST00000411368 105 ntBASIC4.11□□□□□ -1.75
NOD1Q9Y239 AL137159.1-201ENST00000452808 512 ntBASIC4.11□□□□□ -1.75
NOD1Q9Y239 RNU6-971P-201ENST00000516920 106 ntBASIC4.11□□□□□ -1.75
NOD1Q9Y239 SNORA62.6-201ENST00000606322 83 ntBASIC4.11□□□□□ -1.75
NOD1Q9Y239 MIR7154-201ENST00000620673 73 ntBASIC4.11□□□□□ -1.75
NOD1Q9Y239 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC4.11□□□□□ -1.75
NOD1Q9Y239 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
NOD1Q9Y239 AC006504.1-201ENST00000562493 3666 ntBASIC4.11□□□□□ -1.75
NOD1Q9Y239 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC4.11□□□□□ -1.75
NOD1Q9Y239 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
NOD1Q9Y239 Y_RNA.124-201ENST00000363339 93 ntBASIC4.1□□□□□ -1.75
NOD1Q9Y239 U8.7-201ENST00000364940 136 ntBASIC4.1□□□□□ -1.75
NOD1Q9Y239 MIR15B-201ENST00000385045 98 ntBASIC4.1□□□□□ -1.75
NOD1Q9Y239 MIR29B2-201ENST00000385055 81 ntBASIC4.1□□□□□ -1.75
NOD1Q9Y239 AL606845.1-201ENST00000404881 255 ntBASIC4.1□□□□□ -1.75
NOD1Q9Y239 Z92545.1-201ENST00000411782 234 ntBASIC4.1□□□□□ -1.75
NOD1Q9Y239 RPL21P10-201ENST00000463521 490 ntBASIC4.1□□□□□ -1.75
NOD1Q9Y239 RN7SL601P-201ENST00000471221 293 ntBASIC4.1□□□□□ -1.75
NOD1Q9Y239 RAC1P2-201ENST00000511164 579 ntBASIC4.1□□□□□ -1.75
NOD1Q9Y239 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC4.1□□□□□ -1.75
NOD1Q9Y239 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC4.1□□□□□ -1.75
NOD1Q9Y239 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC4.1□□□□□ -1.75
NOD1Q9Y239 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
NOD1Q9Y239 SYT14-208ENST00000637265 13567 ntTSL 5 BASIC4.1□□□□□ -1.75
NOD1Q9Y239 POSTN-203ENST00000379747 3373 ntAPPRIS P3 TSL 1 (best) BASIC4.1□□□□□ -1.75
NOD1Q9Y239 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
NOD1Q9Y239 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC4.09□□□□□ -1.75
NOD1Q9Y239 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
NOD1Q9Y239 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
NOD1Q9Y239 RNA5SP502-201ENST00000362694 119 ntBASIC4.09□□□□□ -1.75
NOD1Q9Y239 Y_RNA.261-201ENST00000364631 102 ntBASIC4.09□□□□□ -1.75
NOD1Q9Y239 RNA5SP424-201ENST00000390988 115 ntBASIC4.09□□□□□ -1.75
NOD1Q9Y239 SNORD37.2-201ENST00000391075 66 ntBASIC4.09□□□□□ -1.75
NOD1Q9Y239 U3.44-201ENST00000458938 192 ntBASIC4.09□□□□□ -1.75
NOD1Q9Y239 AC117454.1-201ENST00000491120 168 ntBASIC4.09□□□□□ -1.75
NOD1Q9Y239 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC4.09□□□□□ -1.75
NOD1Q9Y239 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC4.09□□□□□ -1.75
NOD1Q9Y239 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC4.09□□□□□ -1.75
NOD1Q9Y239 AC112693.2-201ENST00000556538 232 ntBASIC4.09□□□□□ -1.75
NOD1Q9Y239 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
NOD1Q9Y239 MIR4765-201ENST00000585007 77 ntBASIC4.09□□□□□ -1.75
NOD1Q9Y239 ZNF616-203ENST00000597013 577 ntTSL 4 BASIC4.09□□□□□ -1.75
NOD1Q9Y239 MIR7851-201ENST00000610611 160 ntBASIC4.09□□□□□ -1.75
NOD1Q9Y239 MSANTD4-206ENST00000617528 508 ntTSL 5 BASIC4.09□□□□□ -1.75
NOD1Q9Y239 AC068647.2-201ENST00000637380 353 ntBASIC4.09□□□□□ -1.75
NOD1Q9Y239 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC4.09□□□□□ -1.75
NOD1Q9Y239 ANKRD20A9P-201ENST00000457997 2978 ntBASIC4.09□□□□□ -1.75
NOD1Q9Y239 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC4.09□□□□□ -1.76
NOD1Q9Y239 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
NOD1Q9Y239 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
NOD1Q9Y239 SNORD114-7-201ENST00000362520 77 ntBASIC4.08□□□□□ -1.76
NOD1Q9Y239 SNORD9-201ENST00000362566 104 ntBASIC4.08□□□□□ -1.76
NOD1Q9Y239 RNA5SP267-201ENST00000364893 126 ntBASIC4.08□□□□□ -1.76
NOD1Q9Y239 RNU6-407P-201ENST00000365280 104 ntBASIC4.08□□□□□ -1.76
NOD1Q9Y239 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
NOD1Q9Y239 IDE-202ENST00000371581 4480 ntTSL 2 BASIC4.08□□□□□ -1.76
NOD1Q9Y239 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC4.08□□□□□ -1.76
NOD1Q9Y239 RNU6-643P-201ENST00000384018 107 ntBASIC4.08□□□□□ -1.76
NOD1Q9Y239 MIR490-201ENST00000384865 128 ntBASIC4.08□□□□□ -1.76
NOD1Q9Y239 RNU6-1228P-201ENST00000391014 107 ntBASIC4.08□□□□□ -1.76
NOD1Q9Y239 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC4.08□□□□□ -1.76
NOD1Q9Y239 MIR873-201ENST00000401120 77 ntBASIC4.08□□□□□ -1.76
NOD1Q9Y239 AL139095.1-201ENST00000404326 391 ntBASIC4.08□□□□□ -1.76
NOD1Q9Y239 RNU6-383P-201ENST00000410864 94 ntBASIC4.08□□□□□ -1.76
NOD1Q9Y239 AC093159.1-201ENST00000416845 424 ntTSL 3 BASIC4.08□□□□□ -1.76
NOD1Q9Y239 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC4.08□□□□□ -1.76
NOD1Q9Y239 RPL23AP7-203ENST00000449021 469 ntBASIC4.08□□□□□ -1.76
NOD1Q9Y239 BX510359.1-201ENST00000456973 237 ntBASIC4.08□□□□□ -1.76
NOD1Q9Y239 RNU7-14P-201ENST00000459331 62 ntBASIC4.08□□□□□ -1.76
NOD1Q9Y239 CENPBD1P1-201ENST00000464061 469 ntBASIC4.08□□□□□ -1.76
NOD1Q9Y239 MIR449C-201ENST00000516047 92 ntBASIC4.08□□□□□ -1.76
NOD1Q9Y239 RNA5SP208-201ENST00000516156 78 ntBASIC4.08□□□□□ -1.76
NOD1Q9Y239 RNU6-561P-201ENST00000516222 102 ntBASIC4.08□□□□□ -1.76
NOD1Q9Y239 RNU4ATAC17P-201ENST00000517272 120 ntBASIC4.08□□□□□ -1.76
NOD1Q9Y239 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC4.08□□□□□ -1.76
NOD1Q9Y239 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC4.08□□□□□ -1.76
NOD1Q9Y239 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC4.08□□□□□ -1.76
NOD1Q9Y239 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC4.08□□□□□ -1.76
NOD1Q9Y239 AC103810.1-201ENST00000579873 453 ntBASIC4.08□□□□□ -1.76
NOD1Q9Y239 MIR548AY-201ENST00000617669 107 ntBASIC4.08□□□□□ -1.76
NOD1Q9Y239 Six3os1_7.1-201ENST00000621512 201 ntBASIC4.08□□□□□ -1.76
NOD1Q9Y239 AP000553.6-201ENST00000641242 118 ntBASIC4.08□□□□□ -1.76
NOD1Q9Y239 OR52E4-202ENST00000641726 2947 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
NOD1Q9Y239 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC4.08□□□□□ -1.76
NOD1Q9Y239 PPIP5K2-201ENST00000321521 15407 ntAPPRIS P3 TSL 5 BASIC4.08□□□□□ -1.76
NOD1Q9Y239 ZNF962P-201ENST00000443465 3140 ntBASIC4.07□□□□□ -1.76
NOD1Q9Y239 RNA5SP205-201ENST00000364653 136 ntBASIC4.07□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 888.4 ms