Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 AC107871.2-201ENST00000612894 502 ntBASIC2.93□□□□□ -1.94
TDP1Q9NUW8 AL357075.2-201ENST00000614906 189 ntBASIC2.93□□□□□ -1.94
TDP1Q9NUW8 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC2.93□□□□□ -1.94
TDP1Q9NUW8 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC2.93□□□□□ -1.94
TDP1Q9NUW8 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC2.92□□□□□ -1.94
TDP1Q9NUW8 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC2.92□□□□□ -1.94
TDP1Q9NUW8 Y_RNA.143-201ENST00000363520 106 ntBASIC2.92□□□□□ -1.94
TDP1Q9NUW8 SNORD32B-201ENST00000364460 84 ntBASIC2.92□□□□□ -1.94
TDP1Q9NUW8 RNU6-793P-201ENST00000384233 104 ntBASIC2.92□□□□□ -1.94
TDP1Q9NUW8 RNU6-1274P-201ENST00000384557 107 ntBASIC2.92□□□□□ -1.94
TDP1Q9NUW8 Y_RNA.595-201ENST00000410403 105 ntBASIC2.92□□□□□ -1.94
TDP1Q9NUW8 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC2.92□□□□□ -1.94
TDP1Q9NUW8 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC2.92□□□□□ -1.94
TDP1Q9NUW8 RAB6C-AS1-202ENST00000433431 123 ntBASIC2.92□□□□□ -1.94
TDP1Q9NUW8 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC2.92□□□□□ -1.94
TDP1Q9NUW8 SNORD109B-201ENST00000458961 67 ntBASIC2.92□□□□□ -1.94
TDP1Q9NUW8 SNORD109A-201ENST00000459128 67 ntBASIC2.92□□□□□ -1.94
TDP1Q9NUW8 AC025465.3-201ENST00000510570 311 ntBASIC2.92□□□□□ -1.94
TDP1Q9NUW8 SNORA40.9-201ENST00000515895 93 ntBASIC2.92□□□□□ -1.94
TDP1Q9NUW8 Y_RNA.683-201ENST00000516508 93 ntBASIC2.92□□□□□ -1.94
TDP1Q9NUW8 SNORA31.26-201ENST00000517250 137 ntBASIC2.92□□□□□ -1.94
TDP1Q9NUW8 AC069294.1-201ENST00000608397 350 ntBASIC2.92□□□□□ -1.94
TDP1Q9NUW8 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC2.92□□□□□ -1.94
TDP1Q9NUW8 MTND5P35-201ENST00000557537 1720 ntBASIC2.92□□□□□ -1.94
TDP1Q9NUW8 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
TDP1Q9NUW8 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
TDP1Q9NUW8 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC2.91□□□□□ -1.94
TDP1Q9NUW8 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC2.91□□□□□ -1.94
TDP1Q9NUW8 RNU1-62P-201ENST00000362599 164 ntBASIC2.91□□□□□ -1.94
TDP1Q9NUW8 RNU6-702P-201ENST00000364982 107 ntBASIC2.91□□□□□ -1.94
TDP1Q9NUW8 Y_RNA.396-201ENST00000383949 103 ntBASIC2.91□□□□□ -1.94
TDP1Q9NUW8 RNU6-505P-201ENST00000384427 107 ntBASIC2.91□□□□□ -1.94
TDP1Q9NUW8 Y_RNA.556-201ENST00000384677 113 ntBASIC2.91□□□□□ -1.94
TDP1Q9NUW8 MIR196B-201ENST00000384852 84 ntBASIC2.91□□□□□ -1.94
TDP1Q9NUW8 MIR9-1-201ENST00000385198 89 ntBASIC2.91□□□□□ -1.94
TDP1Q9NUW8 AL138827.1-201ENST00000402666 306 ntBASIC2.91□□□□□ -1.94
TDP1Q9NUW8 Y_RNA.597-201ENST00000410463 100 ntBASIC2.91□□□□□ -1.94
TDP1Q9NUW8 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC2.91□□□□□ -1.94
TDP1Q9NUW8 RPL21P38-201ENST00000418090 167 ntBASIC2.91□□□□□ -1.94
TDP1Q9NUW8 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC2.91□□□□□ -1.94
TDP1Q9NUW8 ARL5AP4-201ENST00000430731 512 ntBASIC2.91□□□□□ -1.94
TDP1Q9NUW8 AC004386.2-201ENST00000441858 148 ntBASIC2.91□□□□□ -1.94
TDP1Q9NUW8 AC007395.1-201ENST00000451333 677 ntBASIC2.91□□□□□ -1.94
TDP1Q9NUW8 UQCRHP3-201ENST00000451503 251 ntBASIC2.91□□□□□ -1.94
TDP1Q9NUW8 AC090515.1-201ENST00000465295 476 ntBASIC2.91□□□□□ -1.94
TDP1Q9NUW8 AC023141.11-201ENST00000508864 202 ntBASIC2.91□□□□□ -1.94
TDP1Q9NUW8 RN7SKP43-201ENST00000516173 320 ntBASIC2.91□□□□□ -1.94
TDP1Q9NUW8 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC2.91□□□□□ -1.94
TDP1Q9NUW8 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC2.91□□□□□ -1.94
TDP1Q9NUW8 AP003733.2-201ENST00000529409 171 ntBASIC2.91□□□□□ -1.94
TDP1Q9NUW8 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC2.91□□□□□ -1.94
TDP1Q9NUW8 AC023043.3-201ENST00000593113 385 ntBASIC2.91□□□□□ -1.94
TDP1Q9NUW8 AC078899.3-201ENST00000599065 212 ntBASIC2.91□□□□□ -1.94
TDP1Q9NUW8 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC2.91□□□□□ -1.94
TDP1Q9NUW8 TCL6_2.1-201ENST00000615162 119 ntBASIC2.91□□□□□ -1.94
TDP1Q9NUW8 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC2.91□□□□□ -1.94
TDP1Q9NUW8 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC2.91□□□□□ -1.94
TDP1Q9NUW8 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.94
TDP1Q9NUW8 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.95
TDP1Q9NUW8 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.95
TDP1Q9NUW8 RNU6-727P-201ENST00000363592 107 ntBASIC2.9□□□□□ -1.95
TDP1Q9NUW8 RNU6-472P-201ENST00000384299 107 ntBASIC2.9□□□□□ -1.95
TDP1Q9NUW8 RPL21P3-201ENST00000395517 478 ntBASIC2.9□□□□□ -1.95
TDP1Q9NUW8 RNU2-20P-201ENST00000410425 191 ntBASIC2.9□□□□□ -1.95
TDP1Q9NUW8 RNU2-52P-201ENST00000410680 190 ntBASIC2.9□□□□□ -1.95
TDP1Q9NUW8 AC104332.2-201ENST00000429959 156 ntBASIC2.9□□□□□ -1.95
TDP1Q9NUW8 IFNA11P-201ENST00000446352 526 ntBASIC2.9□□□□□ -1.95
TDP1Q9NUW8 AC080013.2-201ENST00000460866 323 ntBASIC2.9□□□□□ -1.95
TDP1Q9NUW8 RN7SL75P-201ENST00000461926 281 ntBASIC2.9□□□□□ -1.95
TDP1Q9NUW8 KRTAP13-6P-201ENST00000508999 371 ntBASIC2.9□□□□□ -1.95
TDP1Q9NUW8 RRN3P3-201ENST00000549207 578 ntBASIC2.9□□□□□ -1.95
TDP1Q9NUW8 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC2.9□□□□□ -1.95
TDP1Q9NUW8 MIR4300-201ENST00000581016 96 ntBASIC2.9□□□□□ -1.95
TDP1Q9NUW8 MIR376A1-201ENST00000616574 68 ntBASIC2.9□□□□□ -1.95
TDP1Q9NUW8 NAA50-211ENST00000630058 177 ntTSL 5 BASIC2.9□□□□□ -1.95
TDP1Q9NUW8 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC2.9□□□□□ -1.95
TDP1Q9NUW8 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC2.9□□□□□ -1.95
TDP1Q9NUW8 AC093831.2-201ENST00000624393 3427 ntBASIC2.89□□□□□ -1.95
TDP1Q9NUW8 LINC02555-201ENST00000563933 1951 ntBASIC2.89□□□□□ -1.95
TDP1Q9NUW8 RNU6-961P-201ENST00000363893 105 ntBASIC2.89□□□□□ -1.95
TDP1Q9NUW8 RNU6-944P-201ENST00000364023 107 ntBASIC2.89□□□□□ -1.95
TDP1Q9NUW8 RNU1-112P-201ENST00000364401 164 ntBASIC2.89□□□□□ -1.95
TDP1Q9NUW8 Y_RNA.376-201ENST00000365638 108 ntBASIC2.89□□□□□ -1.95
TDP1Q9NUW8 Y_RNA.461-201ENST00000384263 103 ntBASIC2.89□□□□□ -1.95
TDP1Q9NUW8 RNU6-937P-201ENST00000384325 106 ntBASIC2.89□□□□□ -1.95
TDP1Q9NUW8 MIR512-1-201ENST00000384913 84 ntBASIC2.89□□□□□ -1.95
TDP1Q9NUW8 SNORD115-46-201ENST00000390982 71 ntBASIC2.89□□□□□ -1.95
TDP1Q9NUW8 RN7SKP58-201ENST00000411010 305 ntBASIC2.89□□□□□ -1.95
TDP1Q9NUW8 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC2.89□□□□□ -1.95
TDP1Q9NUW8 AC009969.1-201ENST00000438726 172 ntBASIC2.89□□□□□ -1.95
TDP1Q9NUW8 PCNPP5-201ENST00000452246 481 ntBASIC2.89□□□□□ -1.95
TDP1Q9NUW8 AC098869.1-201ENST00000481627 292 ntBASIC2.89□□□□□ -1.95
TDP1Q9NUW8 RNU6-408P-201ENST00000515910 100 ntBASIC2.89□□□□□ -1.95
TDP1Q9NUW8 RNU2-44P-201ENST00000516795 194 ntBASIC2.89□□□□□ -1.95
TDP1Q9NUW8 RNU6-586P-201ENST00000517265 104 ntBASIC2.89□□□□□ -1.95
TDP1Q9NUW8 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC2.89□□□□□ -1.95
TDP1Q9NUW8 MIR5006-201ENST00000583027 110 ntBASIC2.89□□□□□ -1.95
TDP1Q9NUW8 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
TDP1Q9NUW8 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC2.89□□□□□ -1.95
TDP1Q9NUW8 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 118 ms