Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 GHR-202ENST00000357703 4316 ntTSL 5 BASIC4.57□□□□□ -1.68
COL9A1P20849 GHR-213ENST00000622294 4312 ntTSL 5 BASIC4.57□□□□□ -1.68
COL9A1P20849 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC4.57□□□□□ -1.68
COL9A1P20849 OR8J3-203ENST00000641913 3047 ntAPPRIS P1 BASIC4.57□□□□□ -1.68
COL9A1P20849 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC4.57□□□□□ -1.68
COL9A1P20849 ADGRL2-208ENST00000370725 5293 ntAPPRIS ALT2 TSL 5 BASIC4.57□□□□□ -1.68
COL9A1P20849 SCN11A-202ENST00000444237 5729 ntAPPRIS ALT2 TSL 5 BASIC4.57□□□□□ -1.68
COL9A1P20849 AL672296.1-201ENST00000427780 2158 ntBASIC4.57□□□□□ -1.68
COL9A1P20849 AC005005.4-201ENST00000623789 16698 ntBASIC4.57□□□□□ -1.68
COL9A1P20849 POSTN-210ENST00000541481 3113 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
COL9A1P20849 MYOZ2-201ENST00000307128 2597 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
COL9A1P20849 LINC01505-206ENST00000637046 4266 ntTSL 5 BASIC4.56□□□□□ -1.68
COL9A1P20849 USP8-201ENST00000307179 4243 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
COL9A1P20849 CEP192-203ENST00000506447 7960 ntAPPRIS P2 TSL 5 BASIC4.56□□□□□ -1.68
COL9A1P20849 POLR2B-203ENST00000431623 3666 ntTSL 2 BASIC4.56□□□□□ -1.68
COL9A1P20849 FNIP1-201ENST00000307954 6366 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
COL9A1P20849 RNY1P1-201ENST00000364372 112 ntBASIC4.56□□□□□ -1.68
COL9A1P20849 RNU6-1240P-201ENST00000365155 104 ntBASIC4.56□□□□□ -1.68
COL9A1P20849 SNORA5.1-201ENST00000384275 131 ntBASIC4.56□□□□□ -1.68
COL9A1P20849 MIR548D2-201ENST00000384955 97 ntBASIC4.56□□□□□ -1.68
COL9A1P20849 EIF4EP4-201ENST00000424916 578 ntBASIC4.56□□□□□ -1.68
COL9A1P20849 AC105398.1-201ENST00000446073 402 ntTSL 5 BASIC4.56□□□□□ -1.68
COL9A1P20849 BX510359.1-201ENST00000456973 237 ntBASIC4.56□□□□□ -1.68
COL9A1P20849 snoU13.28-201ENST00000459235 104 ntBASIC4.56□□□□□ -1.68
COL9A1P20849 AC112771.1-201ENST00000463581 102 ntBASIC4.56□□□□□ -1.68
COL9A1P20849 RN7SKP282-201ENST00000516824 299 ntBASIC4.56□□□□□ -1.68
COL9A1P20849 DEFB131E-201ENST00000532329 154 ntBASIC4.56□□□□□ -1.68
COL9A1P20849 AL110115.1-201ENST00000614396 364 ntBASIC4.56□□□□□ -1.68
COL9A1P20849 AC006971.1-201ENST00000407916 4486 ntBASIC4.56□□□□□ -1.68
COL9A1P20849 CDC23-202ENST00000394886 3155 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
COL9A1P20849 PLS3-209ENST00000539310 3037 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
COL9A1P20849 GABRG2-202ENST00000361925 3767 ntTSL 3 BASIC4.56□□□□□ -1.68
COL9A1P20849 TTC3-204ENST00000399017 10363 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
COL9A1P20849 ADAM29-214ENST00000618444 2949 ntAPPRIS P1 TSL 4 BASIC4.56□□□□□ -1.68
COL9A1P20849 ZFX-203ENST00000379177 7558 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
COL9A1P20849 DOCK7-211ENST00000634264 6303 ntAPPRIS ALT2 TSL 5 BASIC4.55□□□□□ -1.68
COL9A1P20849 KLHL4-202ENST00000373119 5818 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
COL9A1P20849 RWDD2B-207ENST00000493196 3094 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
COL9A1P20849 GABRG2-222ENST00000639975 3662 ntTSL 5 BASIC4.55□□□□□ -1.68
COL9A1P20849 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC4.55□□□□□ -1.68
COL9A1P20849 ZBED6-201ENST00000545588 7979 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
COL9A1P20849 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
COL9A1P20849 LINC01902-202ENST00000636983 4607 ntTSL 5 BASIC4.55□□□□□ -1.68
COL9A1P20849 ZNF660-201ENST00000322734 5834 ntAPPRIS P1 TSL 2 BASIC4.55□□□□□ -1.68
COL9A1P20849 GABRG1-201ENST00000295452 6785 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
COL9A1P20849 ANK3-202ENST00000355288 3811 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
COL9A1P20849 Y_RNA.344-201ENST00000365381 112 ntBASIC4.55□□□□□ -1.68
COL9A1P20849 RNU6-1235P-201ENST00000384559 107 ntBASIC4.55□□□□□ -1.68
COL9A1P20849 RNU2-49P-201ENST00000410666 184 ntBASIC4.55□□□□□ -1.68
COL9A1P20849 RPL23AP52-201ENST00000439311 478 ntBASIC4.55□□□□□ -1.68
COL9A1P20849 AC016717.1-201ENST00000448918 286 ntBASIC4.55□□□□□ -1.68
COL9A1P20849 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC4.55□□□□□ -1.68
COL9A1P20849 RNU6-498P-201ENST00000459468 107 ntBASIC4.55□□□□□ -1.68
COL9A1P20849 RPS26P28-201ENST00000470806 348 ntBASIC4.55□□□□□ -1.68
COL9A1P20849 AC097462.1-201ENST00000514125 324 ntBASIC4.55□□□□□ -1.68
COL9A1P20849 RNA5SP367-201ENST00000516557 118 ntBASIC4.55□□□□□ -1.68
COL9A1P20849 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC4.55□□□□□ -1.68
COL9A1P20849 MIR5197-201ENST00000583721 112 ntBASIC4.55□□□□□ -1.68
COL9A1P20849 AC113403.1-201ENST00000604910 193 ntBASIC4.55□□□□□ -1.68
COL9A1P20849 MIR7975-201ENST00000619350 68 ntBASIC4.55□□□□□ -1.68
COL9A1P20849 AL162726.3-218ENST00000636401 95 ntBASIC4.55□□□□□ -1.68
COL9A1P20849 CACNB4-233ENST00000636773 4143 ntTSL 5 BASIC4.55□□□□□ -1.68
COL9A1P20849 SLC38A2-209ENST00000551374 2802 ntTSL 2 BASIC4.55□□□□□ -1.68
COL9A1P20849 ITGB1-205ENST00000423113 3729 ntAPPRIS ALT1 TSL 5 BASIC4.55□□□□□ -1.68
COL9A1P20849 PCAT14-202ENST00000627127 3935 ntBASIC4.54□□□□□ -1.68
COL9A1P20849 FMO2-201ENST00000209929 3851 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
COL9A1P20849 AASDH-201ENST00000205214 3590 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
COL9A1P20849 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC4.54□□□□□ -1.68
COL9A1P20849 KTN1-202ENST00000395308 4134 ntAPPRIS ALT2 TSL 1 (best) BASIC4.54□□□□□ -1.68
COL9A1P20849 UGT2A1-203ENST00000503640 2595 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
COL9A1P20849 SNORA31-201ENST00000362607 130 ntBASIC4.54□□□□□ -1.68
COL9A1P20849 RNA5SP307-201ENST00000362863 116 ntBASIC4.54□□□□□ -1.68
COL9A1P20849 RNA5SP126-201ENST00000365092 109 ntBASIC4.54□□□□□ -1.68
COL9A1P20849 RNU6-690P-201ENST00000365242 106 ntBASIC4.54□□□□□ -1.68
COL9A1P20849 RNU6-972P-201ENST00000391208 107 ntBASIC4.54□□□□□ -1.68
COL9A1P20849 MIR1294-201ENST00000408503 142 ntBASIC4.54□□□□□ -1.68
COL9A1P20849 MIR1912-201ENST00000410389 80 ntBASIC4.54□□□□□ -1.68
COL9A1P20849 AP002884.2-201ENST00000471647 395 ntBASIC4.54□□□□□ -1.68
COL9A1P20849 RPL36AP48-201ENST00000485521 314 ntBASIC4.54□□□□□ -1.68
COL9A1P20849 NDUFA4P2-201ENST00000489989 244 ntBASIC4.54□□□□□ -1.68
COL9A1P20849 RNU7-172P-201ENST00000517125 64 ntBASIC4.54□□□□□ -1.68
COL9A1P20849 MIR3117-201ENST00000584034 78 ntBASIC4.54□□□□□ -1.68
COL9A1P20849 FAM71BP1-201ENST00000604431 523 ntBASIC4.54□□□□□ -1.68
COL9A1P20849 C2orf91-203ENST00000615044 393 ntAPPRIS ALT2 TSL 5 BASIC4.54□□□□□ -1.68
COL9A1P20849 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC4.54□□□□□ -1.68
COL9A1P20849 CCNT1-205ENST00000618666 6915 ntTSL 2 BASIC4.54□□□□□ -1.68
COL9A1P20849 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
COL9A1P20849 CPHL1P-201ENST00000461341 3407 ntBASIC4.54□□□□□ -1.68
COL9A1P20849 LINC00240-204ENST00000607607 5607 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
COL9A1P20849 PRUNE2-207ENST00000428286 12437 ntTSL 5 BASIC4.54□□□□□ -1.68
COL9A1P20849 SCN11A-203ENST00000456224 5262 ntAPPRIS ALT2 TSL 5 BASIC4.53□□□□□ -1.68
COL9A1P20849 GAB1-203ENST00000505913 2477 ntTSL 2 BASIC4.53□□□□□ -1.68
COL9A1P20849 ROS1-201ENST00000368507 7417 ntAPPRIS ALT2 TSL 5 BASIC4.53□□□□□ -1.68
COL9A1P20849 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
COL9A1P20849 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
COL9A1P20849 SNORD31B-201ENST00000364977 69 ntBASIC4.53□□□□□ -1.68
COL9A1P20849 RNU6-750P-201ENST00000390946 107 ntBASIC4.53□□□□□ -1.68
COL9A1P20849 CKS1BP6-201ENST00000424932 240 ntBASIC4.53□□□□□ -1.68
COL9A1P20849 RNA5SP310-201ENST00000459084 116 ntBASIC4.53□□□□□ -1.68
COL9A1P20849 RNA5SP249-201ENST00000516127 99 ntBASIC4.53□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 113.2 ms