Protein–RNA interactions for Protein: Q12948

FOXC1, Forkhead box protein C1, humanhuman

Predictions only

Length 553 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXC1Q12948 SNORA51-201ENST00000606420 132 ntBASIC4.25□□□□□ -1.73
FOXC1Q12948 AC096577.2-201ENST00000611455 153 ntBASIC4.25□□□□□ -1.73
FOXC1Q12948 ADAM29-214ENST00000618444 2949 ntAPPRIS P1 TSL 4 BASIC4.25□□□□□ -1.73
FOXC1Q12948 AL162726.3-218ENST00000636401 95 ntBASIC4.25□□□□□ -1.73
FOXC1Q12948 MIR4662A-201ENST00000637499 67 ntBASIC4.25□□□□□ -1.73
FOXC1Q12948 EMSY-207ENST00000525919 4074 ntAPPRIS ALT1 TSL 1 (best) BASIC4.25□□□□□ -1.73
FOXC1Q12948 POU2F1-206ENST00000429375 13651 ntAPPRIS ALT2 TSL 2 BASIC4.25□□□□□ -1.73
FOXC1Q12948 NCK1-204ENST00000469404 2403 ntTSL 2 BASIC4.25□□□□□ -1.73
FOXC1Q12948 MYBPC1-205ENST00000536007 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC4.25□□□□□ -1.73
FOXC1Q12948 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
FOXC1Q12948 NLRP11-202ENST00000589824 3231 ntAPPRIS ALT2 TSL 5 BASIC4.25□□□□□ -1.73
FOXC1Q12948 FNIP1-201ENST00000307954 6366 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
FOXC1Q12948 FILIP1L-209ENST00000487087 2321 ntTSL 5 BASIC4.24□□□□□ -1.73
FOXC1Q12948 KLHL13-201ENST00000262820 3972 ntAPPRIS P3 TSL 1 (best) BASIC4.24□□□□□ -1.73
FOXC1Q12948 SMC2-AS1-201ENST00000603487 7020 ntTSL 2 BASIC4.24□□□□□ -1.73
FOXC1Q12948 BMPR1B-203ENST00000440890 5388 ntTSL 2 BASIC4.24□□□□□ -1.73
FOXC1Q12948 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
FOXC1Q12948 RNY3P2-201ENST00000362918 102 ntBASIC4.24□□□□□ -1.73
FOXC1Q12948 RNU6-1240P-201ENST00000365155 104 ntBASIC4.24□□□□□ -1.73
FOXC1Q12948 LST1-207ENST00000376092 285 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
FOXC1Q12948 MIR548D2-201ENST00000384955 97 ntBASIC4.24□□□□□ -1.73
FOXC1Q12948 AL451046.2-201ENST00000403074 277 ntBASIC4.24□□□□□ -1.73
FOXC1Q12948 BX276092.6-201ENST00000430476 250 ntBASIC4.24□□□□□ -1.73
FOXC1Q12948 IFNWP4-201ENST00000453148 294 ntBASIC4.24□□□□□ -1.73
FOXC1Q12948 BX276092.8-201ENST00000455722 250 ntBASIC4.24□□□□□ -1.73
FOXC1Q12948 APOA2-207ENST00000470459 416 ntTSL 5 BASIC4.24□□□□□ -1.73
FOXC1Q12948 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC4.24□□□□□ -1.73
FOXC1Q12948 RNU4ATAC18P-201ENST00000516179 126 ntBASIC4.24□□□□□ -1.73
FOXC1Q12948 AL355076.2-201ENST00000555736 544 ntTSL 5 BASIC4.24□□□□□ -1.73
FOXC1Q12948 AC126323.3-201ENST00000565136 564 ntTSL 4 BASIC4.24□□□□□ -1.73
FOXC1Q12948 AL606490.9-201ENST00000603331 271 ntBASIC4.24□□□□□ -1.73
FOXC1Q12948 RPL17P51-201ENST00000605218 238 ntBASIC4.24□□□□□ -1.73
FOXC1Q12948 AC019176.2-201ENST00000611579 315 ntBASIC4.24□□□□□ -1.73
FOXC1Q12948 AP001005.3-201ENST00000622049 129 ntBASIC4.24□□□□□ -1.73
FOXC1Q12948 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC4.24□□□□□ -1.73
FOXC1Q12948 AC007656.2-201ENST00000624902 4547 ntBASIC4.24□□□□□ -1.73
FOXC1Q12948 SKIL-201ENST00000259119 3057 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
FOXC1Q12948 SCEL-205ENST00000535157 3096 ntAPPRIS ALT2 TSL 2 BASIC4.24□□□□□ -1.73
FOXC1Q12948 RAD17-203ENST00000345306 2789 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
FOXC1Q12948 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC4.24□□□□□ -1.73
FOXC1Q12948 CMYA5-201ENST00000446378 12847 ntAPPRIS P1 TSL 5 BASIC4.23□□□□□ -1.73
FOXC1Q12948 AL356489.2-201ENST00000566968 3528 ntBASIC4.23□□□□□ -1.73
FOXC1Q12948 STAG2-204ENST00000371157 5991 ntAPPRIS P3 TSL 1 (best) BASIC4.23□□□□□ -1.73
FOXC1Q12948 AC104260.2-201ENST00000623551 3497 ntBASIC4.23□□□□□ -1.73
FOXC1Q12948 RNU6-486P-201ENST00000363116 107 ntBASIC4.23□□□□□ -1.73
FOXC1Q12948 RNU4-36P-201ENST00000364294 144 ntBASIC4.23□□□□□ -1.73
FOXC1Q12948 RNU6-776P-201ENST00000364403 104 ntBASIC4.23□□□□□ -1.73
FOXC1Q12948 RNU6-1022P-201ENST00000365049 104 ntBASIC4.23□□□□□ -1.73
FOXC1Q12948 RNU6-1181P-201ENST00000384191 106 ntBASIC4.23□□□□□ -1.73
FOXC1Q12948 RNA5SP354-201ENST00000391247 136 ntBASIC4.23□□□□□ -1.73
FOXC1Q12948 AL031121.1-201ENST00000406553 254 ntBASIC4.23□□□□□ -1.73
FOXC1Q12948 AL353689.1-201ENST00000438895 199 ntBASIC4.23□□□□□ -1.73
FOXC1Q12948 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC4.23□□□□□ -1.73
FOXC1Q12948 RPS15AP11-201ENST00000594193 385 ntBASIC4.23□□□□□ -1.73
FOXC1Q12948 RNU6-91P-201ENST00000607774 107 ntBASIC4.23□□□□□ -1.73
FOXC1Q12948 MIR6715B-201ENST00000637172 77 ntBASIC4.23□□□□□ -1.73
FOXC1Q12948 POF1B-201ENST00000262753 3941 ntAPPRIS P3 TSL 1 (best) BASIC4.23□□□□□ -1.73
FOXC1Q12948 PIGN-242ENST00000640145 4505 ntAPPRIS P1 TSL 5 BASIC4.23□□□□□ -1.73
FOXC1Q12948 LINC02458-201ENST00000500381 2941 ntTSL 2 BASIC4.23□□□□□ -1.73
FOXC1Q12948 PCDH15-209ENST00000395433 6942 ntTSL 5 BASIC4.23□□□□□ -1.73
FOXC1Q12948 MPDZ-215ENST00000541718 7603 ntAPPRIS P3 TSL 1 (best) BASIC4.23□□□□□ -1.73
FOXC1Q12948 LBR-202ENST00000338179 3812 ntAPPRIS P1 TSL 5 BASIC4.23□□□□□ -1.73
FOXC1Q12948 PLCB4-206ENST00000414679 3947 ntAPPRIS ALT1 TSL 5 BASIC4.23□□□□□ -1.73
FOXC1Q12948 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC4.23□□□□□ -1.73
FOXC1Q12948 FAP-203ENST00000443424 2598 ntTSL 2 BASIC4.22□□□□□ -1.73
FOXC1Q12948 CENPF-201ENST00000366955 10307 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
FOXC1Q12948 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
FOXC1Q12948 CDK15-204ENST00000450471 3659 ntAPPRIS ALT1 TSL 1 (best) BASIC4.22□□□□□ -1.73
FOXC1Q12948 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
FOXC1Q12948 PCDH15-206ENST00000373965 9237 ntAPPRIS ALT2 TSL 5 BASIC4.22□□□□□ -1.73
FOXC1Q12948 ANKRD34C-201ENST00000421388 4951 ntAPPRIS P1 BASIC4.22□□□□□ -1.73
FOXC1Q12948 RGS4-202ENST00000367908 2606 ntTSL 2 BASIC4.22□□□□□ -1.73
FOXC1Q12948 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC4.22□□□□□ -1.73
FOXC1Q12948 RNA5SP119-201ENST00000362715 117 ntBASIC4.22□□□□□ -1.73
FOXC1Q12948 RNA5SP124-201ENST00000362739 110 ntBASIC4.22□□□□□ -1.73
FOXC1Q12948 RNU4-13P-201ENST00000364019 141 ntBASIC4.22□□□□□ -1.73
FOXC1Q12948 SNORD61-201ENST00000384252 73 ntBASIC4.22□□□□□ -1.73
FOXC1Q12948 MIR195-201ENST00000385194 87 ntBASIC4.22□□□□□ -1.73
FOXC1Q12948 SNORA68.2-201ENST00000391263 128 ntBASIC4.22□□□□□ -1.73
FOXC1Q12948 RPL36AP10-201ENST00000421785 322 ntBASIC4.22□□□□□ -1.73
FOXC1Q12948 AL161651.1-201ENST00000440882 223 ntBASIC4.22□□□□□ -1.73
FOXC1Q12948 RN7SL807P-201ENST00000470923 297 ntBASIC4.22□□□□□ -1.73
FOXC1Q12948 RNA5SP49-201ENST00000516450 115 ntBASIC4.22□□□□□ -1.73
FOXC1Q12948 AL138721.1-201ENST00000616756 179 ntBASIC4.22□□□□□ -1.73
FOXC1Q12948 HOTTIP_4.1-201ENST00000618195 165 ntBASIC4.22□□□□□ -1.73
FOXC1Q12948 Six3os1_7.1-201ENST00000621512 201 ntBASIC4.22□□□□□ -1.73
FOXC1Q12948 ZNF560-201ENST00000301480 2654 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
FOXC1Q12948 ZNF382-203ENST00000435416 3865 ntAPPRIS ALT1 TSL 1 (best) BASIC4.22□□□□□ -1.73
FOXC1Q12948 UBR1-201ENST00000290650 7761 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
FOXC1Q12948 SOCS5-201ENST00000306503 4771 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
FOXC1Q12948 POLR2B-203ENST00000431623 3666 ntTSL 2 BASIC4.22□□□□□ -1.73
FOXC1Q12948 MYBPC1-208ENST00000547405 3834 ntAPPRIS ALT2 TSL 1 (best) BASIC4.21□□□□□ -1.73
FOXC1Q12948 EYA1-205ENST00000388742 3907 ntAPPRIS P3 TSL 1 (best) BASIC4.21□□□□□ -1.73
FOXC1Q12948 COPG2-201ENST00000330992 3073 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
FOXC1Q12948 NOSTRIN-206ENST00000444448 2537 ntTSL 5 BASIC4.21□□□□□ -1.74
FOXC1Q12948 ZNF510-201ENST00000223428 5154 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
FOXC1Q12948 RNU6-888P-201ENST00000363010 101 ntBASIC4.21□□□□□ -1.74
FOXC1Q12948 ACEA_U3.1-201ENST00000363057 217 ntBASIC4.21□□□□□ -1.74
FOXC1Q12948 MIR759-201ENST00000390224 91 ntBASIC4.21□□□□□ -1.74
FOXC1Q12948 SNORD77.3-201ENST00000391113 65 ntBASIC4.21□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 119.8 ms