Protein–RNA interactions for Protein: Q9UPQ4

TRIM35, Tripartite motif-containing protein 35, humanhuman

Predictions only

Length 493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM35Q9UPQ4 APAF1-209ENST00000550527 6581 ntAPPRIS ALT1 TSL 1 (best) BASIC5.56□□□□□ -1.52
TRIM35Q9UPQ4 PJA2-202ENST00000361557 4645 ntAPPRIS P1 TSL 2 BASIC5.56□□□□□ -1.52
TRIM35Q9UPQ4 PTPRD-201ENST00000355233 8251 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
TRIM35Q9UPQ4 ORC4-202ENST00000392857 6530 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
TRIM35Q9UPQ4 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
TRIM35Q9UPQ4 ZNF12-203ENST00000404360 4474 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
TRIM35Q9UPQ4 PTPN22-201ENST00000359785 3654 ntAPPRIS P2 TSL 1 (best) BASIC5.55□□□□□ -1.52
TRIM35Q9UPQ4 AC020633.1-201ENST00000468439 2247 ntBASIC5.55□□□□□ -1.52
TRIM35Q9UPQ4 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC5.55□□□□□ -1.52
TRIM35Q9UPQ4 BCLAF1-202ENST00000392348 2610 ntTSL 5 BASIC5.55□□□□□ -1.52
TRIM35Q9UPQ4 FAM169A-203ENST00000510496 5810 ntTSL 5 BASIC5.55□□□□□ -1.52
TRIM35Q9UPQ4 CP-201ENST00000264613 4676 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
TRIM35Q9UPQ4 SNORA27.1-201ENST00000362604 124 ntBASIC5.55□□□□□ -1.52
TRIM35Q9UPQ4 RNU6-217P-201ENST00000384164 104 ntBASIC5.55□□□□□ -1.52
TRIM35Q9UPQ4 Y_RNA.486-201ENST00000384398 107 ntBASIC5.55□□□□□ -1.52
TRIM35Q9UPQ4 MIR548D2-201ENST00000384955 97 ntBASIC5.55□□□□□ -1.52
TRIM35Q9UPQ4 MIR1185-2-201ENST00000408687 86 ntBASIC5.55□□□□□ -1.52
TRIM35Q9UPQ4 Y_RNA.601-201ENST00000410500 113 ntBASIC5.55□□□□□ -1.52
TRIM35Q9UPQ4 RN7SL385P-201ENST00000468873 276 ntBASIC5.55□□□□□ -1.52
TRIM35Q9UPQ4 LINC02017-201ENST00000496829 474 ntTSL 3 BASIC5.55□□□□□ -1.52
TRIM35Q9UPQ4 AC099522.1-202ENST00000514718 367 ntBASIC5.55□□□□□ -1.52
TRIM35Q9UPQ4 RNU7-149P-201ENST00000516739 59 ntBASIC5.55□□□□□ -1.52
TRIM35Q9UPQ4 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC5.55□□□□□ -1.52
TRIM35Q9UPQ4 AL355076.2-201ENST00000555736 544 ntTSL 5 BASIC5.55□□□□□ -1.52
TRIM35Q9UPQ4 HOTTIP_4.1-201ENST00000618195 165 ntBASIC5.55□□□□□ -1.52
TRIM35Q9UPQ4 LUZP2-207ENST00000533227 5016 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
TRIM35Q9UPQ4 ADNP-201ENST00000349014 5963 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
TRIM35Q9UPQ4 U2SURP-214ENST00000493598 3491 ntTSL 5 BASIC5.55□□□□□ -1.52
TRIM35Q9UPQ4 SLC44A5-202ENST00000370859 3896 ntAPPRIS ALT2 TSL 2 BASIC5.55□□□□□ -1.52
TRIM35Q9UPQ4 MLH3-212ENST00000556740 4491 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
TRIM35Q9UPQ4 AL133243.3-201ENST00000617415 3004 ntBASIC5.55□□□□□ -1.52
TRIM35Q9UPQ4 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC5.54□□□□□ -1.52
TRIM35Q9UPQ4 DMXL2-203ENST00000543779 10400 ntAPPRIS ALT2 TSL 1 (best) BASIC5.54□□□□□ -1.52
TRIM35Q9UPQ4 TTC21B-AS1-201ENST00000440322 2260 ntTSL 4 BASIC5.54□□□□□ -1.52
TRIM35Q9UPQ4 RAD17-203ENST00000345306 2789 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
TRIM35Q9UPQ4 C2CD6-204ENST00000450242 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC5.54□□□□□ -1.52
TRIM35Q9UPQ4 MIR383-201ENST00000362257 73 ntBASIC5.54□□□□□ -1.52
TRIM35Q9UPQ4 RNU1-108P-201ENST00000362556 161 ntBASIC5.54□□□□□ -1.52
TRIM35Q9UPQ4 SNORD115-13-201ENST00000363358 82 ntBASIC5.54□□□□□ -1.52
TRIM35Q9UPQ4 RNA5SP28-201ENST00000363841 119 ntBASIC5.54□□□□□ -1.52
TRIM35Q9UPQ4 SNORD115-16-201ENST00000363887 82 ntBASIC5.54□□□□□ -1.52
TRIM35Q9UPQ4 SNORA70.2-201ENST00000364506 135 ntBASIC5.54□□□□□ -1.52
TRIM35Q9UPQ4 SNORD115-1-201ENST00000364961 82 ntBASIC5.54□□□□□ -1.52
TRIM35Q9UPQ4 MT-TI-201ENST00000387365 69 ntBASIC5.54□□□□□ -1.52
TRIM35Q9UPQ4 PTMAP5-201ENST00000393073 333 ntBASIC5.54□□□□□ -1.52
TRIM35Q9UPQ4 RNU6-402P-201ENST00000410678 103 ntBASIC5.54□□□□□ -1.52
TRIM35Q9UPQ4 AC018634.1-201ENST00000437554 401 ntBASIC5.54□□□□□ -1.52
TRIM35Q9UPQ4 OR9P1P-201ENST00000496431 281 ntBASIC5.54□□□□□ -1.52
TRIM35Q9UPQ4 AC093663.1-201ENST00000497190 394 ntBASIC5.54□□□□□ -1.52
TRIM35Q9UPQ4 RNU6-581P-201ENST00000516214 105 ntBASIC5.54□□□□□ -1.52
TRIM35Q9UPQ4 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC5.54□□□□□ -1.52
TRIM35Q9UPQ4 AL929325.1-201ENST00000603096 117 ntBASIC5.54□□□□□ -1.52
TRIM35Q9UPQ4 MIR8059-201ENST00000620427 81 ntBASIC5.54□□□□□ -1.52
TRIM35Q9UPQ4 CNTN5-207ENST00000527185 4303 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
TRIM35Q9UPQ4 ADGRG4-201ENST00000370652 9820 ntAPPRIS P2 TSL 5 BASIC5.54□□□□□ -1.52
TRIM35Q9UPQ4 ABCA12-201ENST00000272895 9100 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
TRIM35Q9UPQ4 AP001273.1-201ENST00000624493 3152 ntBASIC5.53□□□□□ -1.52
TRIM35Q9UPQ4 HMCN1-201ENST00000271588 18208 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
TRIM35Q9UPQ4 MFSD8-242ENST00000641690 4199 ntBASIC5.53□□□□□ -1.52
TRIM35Q9UPQ4 CFAP70-203ENST00000355577 3691 ntTSL 5 BASIC5.53□□□□□ -1.52
TRIM35Q9UPQ4 AL157756.1-201ENST00000532515 2859 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
TRIM35Q9UPQ4 AL353705.1-201ENST00000433468 480 ntBASIC5.53□□□□□ -1.52
TRIM35Q9UPQ4 RPL27AP5-201ENST00000469428 449 ntBASIC5.53□□□□□ -1.52
TRIM35Q9UPQ4 PARP4P3-201ENST00000510265 317 ntBASIC5.53□□□□□ -1.52
TRIM35Q9UPQ4 AP004371.1-201ENST00000525240 214 ntBASIC5.53□□□□□ -1.52
TRIM35Q9UPQ4 MIR7151-201ENST00000617477 60 ntBASIC5.53□□□□□ -1.52
TRIM35Q9UPQ4 SMCR2_2.1-201ENST00000619783 161 ntBASIC5.53□□□□□ -1.52
TRIM35Q9UPQ4 TET2-202ENST00000305737 9233 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
TRIM35Q9UPQ4 NEAT1-202ENST00000501122 22743 ntBASIC5.53□□□□□ -1.52
TRIM35Q9UPQ4 ADAM7-201ENST00000175238 3367 ntAPPRIS P2 TSL 1 (best) BASIC5.53□□□□□ -1.52
TRIM35Q9UPQ4 LRP6-201ENST00000261349 10020 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
TRIM35Q9UPQ4 OSBPL8-202ENST00000393249 7047 ntAPPRIS ALT1 TSL 1 (best) BASIC5.52□□□□□ -1.53
TRIM35Q9UPQ4 CTXN2-201ENST00000417307 2828 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
TRIM35Q9UPQ4 SLC17A4-203ENST00000439485 3699 ntTSL 5 BASIC5.52□□□□□ -1.53
TRIM35Q9UPQ4 EPHA7-202ENST00000369303 6588 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
TRIM35Q9UPQ4 RNU1-15P-201ENST00000353977 144 ntBASIC5.52□□□□□ -1.53
TRIM35Q9UPQ4 Y_RNA.203-201ENST00000364106 102 ntBASIC5.52□□□□□ -1.53
TRIM35Q9UPQ4 RNU1-133P-201ENST00000364867 167 ntBASIC5.52□□□□□ -1.53
TRIM35Q9UPQ4 SNORD116-22-201ENST00000384430 92 ntBASIC5.52□□□□□ -1.53
TRIM35Q9UPQ4 MIR562-201ENST00000384894 95 ntBASIC5.52□□□□□ -1.53
TRIM35Q9UPQ4 AC009237.10-201ENST00000414112 510 ntBASIC5.52□□□□□ -1.53
TRIM35Q9UPQ4 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC5.52□□□□□ -1.53
TRIM35Q9UPQ4 RPS26P48-201ENST00000491713 339 ntBASIC5.52□□□□□ -1.53
TRIM35Q9UPQ4 RNU6-162P-201ENST00000516228 103 ntBASIC5.52□□□□□ -1.53
TRIM35Q9UPQ4 RN7SKP209-201ENST00000516888 304 ntBASIC5.52□□□□□ -1.53
TRIM35Q9UPQ4 RNU4-60P-201ENST00000517239 135 ntBASIC5.52□□□□□ -1.53
TRIM35Q9UPQ4 MRPL49P2-201ENST00000521066 465 ntBASIC5.52□□□□□ -1.53
TRIM35Q9UPQ4 THEMIS-204ENST00000537166 3830 ntAPPRIS ALT2 TSL 2 BASIC5.52□□□□□ -1.53
TRIM35Q9UPQ4 MYBPC1-208ENST00000547405 3834 ntAPPRIS ALT2 TSL 1 (best) BASIC5.52□□□□□ -1.53
TRIM35Q9UPQ4 AL161713.1-201ENST00000555538 145 ntBASIC5.52□□□□□ -1.53
TRIM35Q9UPQ4 TVP23BP1-201ENST00000557500 617 ntBASIC5.52□□□□□ -1.53
TRIM35Q9UPQ4 AC105137.2-201ENST00000569073 466 ntBASIC5.52□□□□□ -1.53
TRIM35Q9UPQ4 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC5.52□□□□□ -1.53
TRIM35Q9UPQ4 CSMD3-203ENST00000343508 13018 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
TRIM35Q9UPQ4 MAP2-202ENST00000360351 9711 ntAPPRIS P2 TSL 5 BASIC5.52□□□□□ -1.53
TRIM35Q9UPQ4 INTU-201ENST00000335251 13233 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
TRIM35Q9UPQ4 ZFX-203ENST00000379177 7558 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
TRIM35Q9UPQ4 AC092447.5-201ENST00000429367 2741 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
TRIM35Q9UPQ4 RANBP3L-201ENST00000296604 3104 ntAPPRIS P3 TSL 1 (best) BASIC5.52□□□□□ -1.53
TRIM35Q9UPQ4 USP34-201ENST00000398571 11357 ntAPPRIS P1 TSL 5 BASIC5.52□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 110.8 ms