Protein–RNA interactions for Protein: Q9Y6N9

USH1C, Harmonin, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH1CQ9Y6N9 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
USH1CQ9Y6N9 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC18.88■□□□□ 0.61
USH1CQ9Y6N9 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
USH1CQ9Y6N9 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC18.88■□□□□ 0.61
USH1CQ9Y6N9 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
USH1CQ9Y6N9 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
USH1CQ9Y6N9 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
USH1CQ9Y6N9 STX7-201ENST00000367937 1090 ntTSL 5 BASIC18.88■□□□□ 0.61
USH1CQ9Y6N9 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
USH1CQ9Y6N9 NTF6G-201ENST00000591094 616 ntBASIC18.88■□□□□ 0.61
USH1CQ9Y6N9 AL589743.5-201ENST00000616611 1050 ntBASIC18.88■□□□□ 0.61
USH1CQ9Y6N9 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC18.88■□□□□ 0.61
USH1CQ9Y6N9 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
USH1CQ9Y6N9 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC18.88■□□□□ 0.61
USH1CQ9Y6N9 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
USH1CQ9Y6N9 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC18.88■□□□□ 0.61
USH1CQ9Y6N9 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
USH1CQ9Y6N9 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
USH1CQ9Y6N9 TFP1-202ENST00000475455 1573 ntBASIC18.88■□□□□ 0.61
USH1CQ9Y6N9 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
USH1CQ9Y6N9 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
USH1CQ9Y6N9 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC18.88■□□□□ 0.61
USH1CQ9Y6N9 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
USH1CQ9Y6N9 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
USH1CQ9Y6N9 AC008764.6-201ENST00000595909 2069 ntBASIC18.88■□□□□ 0.61
USH1CQ9Y6N9 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
USH1CQ9Y6N9 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC18.87■□□□□ 0.61
USH1CQ9Y6N9 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
USH1CQ9Y6N9 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
USH1CQ9Y6N9 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
USH1CQ9Y6N9 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
USH1CQ9Y6N9 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
USH1CQ9Y6N9 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
USH1CQ9Y6N9 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC18.87■□□□□ 0.61
USH1CQ9Y6N9 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
USH1CQ9Y6N9 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC18.87■□□□□ 0.61
USH1CQ9Y6N9 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
USH1CQ9Y6N9 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
USH1CQ9Y6N9 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC18.87■□□□□ 0.61
USH1CQ9Y6N9 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
USH1CQ9Y6N9 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC18.87■□□□□ 0.61
USH1CQ9Y6N9 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC18.87■□□□□ 0.61
USH1CQ9Y6N9 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC18.87■□□□□ 0.61
USH1CQ9Y6N9 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
USH1CQ9Y6N9 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
USH1CQ9Y6N9 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
USH1CQ9Y6N9 AC139713.2-201ENST00000641328 2723 ntBASIC18.87■□□□□ 0.61
USH1CQ9Y6N9 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
USH1CQ9Y6N9 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC18.86■□□□□ 0.61
USH1CQ9Y6N9 PRORSD1P-202ENST00000563365 2154 ntBASIC18.86■□□□□ 0.61
USH1CQ9Y6N9 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
USH1CQ9Y6N9 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
USH1CQ9Y6N9 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC18.86■□□□□ 0.61
USH1CQ9Y6N9 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
USH1CQ9Y6N9 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC18.86■□□□□ 0.61
USH1CQ9Y6N9 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
USH1CQ9Y6N9 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
USH1CQ9Y6N9 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
USH1CQ9Y6N9 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
USH1CQ9Y6N9 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC18.86■□□□□ 0.61
USH1CQ9Y6N9 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
USH1CQ9Y6N9 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
USH1CQ9Y6N9 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
USH1CQ9Y6N9 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
USH1CQ9Y6N9 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
USH1CQ9Y6N9 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
USH1CQ9Y6N9 CALM3-202ENST00000391918 702 ntTSL 2 BASIC18.86■□□□□ 0.61
USH1CQ9Y6N9 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC18.86■□□□□ 0.61
USH1CQ9Y6N9 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC18.86■□□□□ 0.61
USH1CQ9Y6N9 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
USH1CQ9Y6N9 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
USH1CQ9Y6N9 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC18.86■□□□□ 0.61
USH1CQ9Y6N9 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
USH1CQ9Y6N9 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
USH1CQ9Y6N9 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
USH1CQ9Y6N9 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC18.86■□□□□ 0.61
USH1CQ9Y6N9 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
USH1CQ9Y6N9 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
USH1CQ9Y6N9 PKD1P1-201ENST00000458669 6805 ntBASIC18.86■□□□□ 0.61
USH1CQ9Y6N9 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC18.85■□□□□ 0.61
USH1CQ9Y6N9 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
USH1CQ9Y6N9 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC18.85■□□□□ 0.61
USH1CQ9Y6N9 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
USH1CQ9Y6N9 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC18.85■□□□□ 0.61
USH1CQ9Y6N9 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC18.85■□□□□ 0.61
USH1CQ9Y6N9 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
USH1CQ9Y6N9 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
USH1CQ9Y6N9 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
USH1CQ9Y6N9 MIR638-201ENST00000385237 100 ntBASIC18.85■□□□□ 0.61
USH1CQ9Y6N9 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC18.85■□□□□ 0.61
USH1CQ9Y6N9 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC18.85■□□□□ 0.61
USH1CQ9Y6N9 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC18.85■□□□□ 0.61
USH1CQ9Y6N9 AC069236.1-201ENST00000604339 616 ntBASIC18.85■□□□□ 0.61
USH1CQ9Y6N9 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
USH1CQ9Y6N9 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
USH1CQ9Y6N9 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
USH1CQ9Y6N9 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
USH1CQ9Y6N9 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
USH1CQ9Y6N9 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
USH1CQ9Y6N9 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms