Protein–RNA interactions for Protein: Q9Y5X1

SNX9, Sorting nexin-9, humanhuman

Predictions only

Length 595 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX9Q9Y5X1 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC20.29■□□□□ 0.84
SNX9Q9Y5X1 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
SNX9Q9Y5X1 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
SNX9Q9Y5X1 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC20.29■□□□□ 0.84
SNX9Q9Y5X1 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
SNX9Q9Y5X1 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
SNX9Q9Y5X1 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC20.29■□□□□ 0.84
SNX9Q9Y5X1 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SNX9Q9Y5X1 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SNX9Q9Y5X1 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
SNX9Q9Y5X1 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
SNX9Q9Y5X1 LIN28AP1-201ENST00000429574 405 ntBASIC20.29■□□□□ 0.84
SNX9Q9Y5X1 KRT18P57-201ENST00000443599 1254 ntBASIC20.29■□□□□ 0.84
SNX9Q9Y5X1 GXYLT1P6-201ENST00000456472 1187 ntBASIC20.29■□□□□ 0.84
SNX9Q9Y5X1 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC20.29■□□□□ 0.84
SNX9Q9Y5X1 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC20.29■□□□□ 0.84
SNX9Q9Y5X1 AC008622.2-201ENST00000617006 1229 ntBASIC20.29■□□□□ 0.84
SNX9Q9Y5X1 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC20.29■□□□□ 0.84
SNX9Q9Y5X1 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC20.29■□□□□ 0.84
SNX9Q9Y5X1 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC20.29■□□□□ 0.84
SNX9Q9Y5X1 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC20.29■□□□□ 0.84
SNX9Q9Y5X1 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC20.29■□□□□ 0.84
SNX9Q9Y5X1 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC20.28■□□□□ 0.84
SNX9Q9Y5X1 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC20.28■□□□□ 0.84
SNX9Q9Y5X1 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
SNX9Q9Y5X1 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SNX9Q9Y5X1 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC20.28■□□□□ 0.84
SNX9Q9Y5X1 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SNX9Q9Y5X1 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SNX9Q9Y5X1 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
SNX9Q9Y5X1 ATP5G1P1-201ENST00000448724 379 ntBASIC20.28■□□□□ 0.84
SNX9Q9Y5X1 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
SNX9Q9Y5X1 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC20.28■□□□□ 0.84
SNX9Q9Y5X1 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC20.28■□□□□ 0.84
SNX9Q9Y5X1 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC20.28■□□□□ 0.84
SNX9Q9Y5X1 RN7SL850P-201ENST00000579959 291 ntBASIC20.28■□□□□ 0.84
SNX9Q9Y5X1 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
SNX9Q9Y5X1 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SNX9Q9Y5X1 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SNX9Q9Y5X1 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SNX9Q9Y5X1 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SNX9Q9Y5X1 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SNX9Q9Y5X1 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.84
SNX9Q9Y5X1 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SNX9Q9Y5X1 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
SNX9Q9Y5X1 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SNX9Q9Y5X1 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SNX9Q9Y5X1 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SNX9Q9Y5X1 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SNX9Q9Y5X1 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SNX9Q9Y5X1 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SNX9Q9Y5X1 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
SNX9Q9Y5X1 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
SNX9Q9Y5X1 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SNX9Q9Y5X1 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC20.27■□□□□ 0.84
SNX9Q9Y5X1 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC20.27■□□□□ 0.84
SNX9Q9Y5X1 GPX4-207ENST00000589115 812 ntTSL 2 BASIC20.27■□□□□ 0.84
SNX9Q9Y5X1 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC20.27■□□□□ 0.84
SNX9Q9Y5X1 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SNX9Q9Y5X1 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SNX9Q9Y5X1 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
SNX9Q9Y5X1 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.83
SNX9Q9Y5X1 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.83
SNX9Q9Y5X1 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
SNX9Q9Y5X1 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC20.27■□□□□ 0.83
SNX9Q9Y5X1 KRT8P3-201ENST00000519669 1449 ntBASIC20.27■□□□□ 0.83
SNX9Q9Y5X1 AC073508.3-201ENST00000619697 1419 ntBASIC20.27■□□□□ 0.83
SNX9Q9Y5X1 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SNX9Q9Y5X1 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
SNX9Q9Y5X1 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SNX9Q9Y5X1 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC20.26■□□□□ 0.83
SNX9Q9Y5X1 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC20.26■□□□□ 0.83
SNX9Q9Y5X1 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SNX9Q9Y5X1 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
SNX9Q9Y5X1 TK2-213ENST00000563369 882 ntTSL 5 BASIC20.26■□□□□ 0.83
SNX9Q9Y5X1 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
SNX9Q9Y5X1 AC092865.7-201ENST00000641832 219 ntBASIC20.26■□□□□ 0.83
SNX9Q9Y5X1 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
SNX9Q9Y5X1 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SNX9Q9Y5X1 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SNX9Q9Y5X1 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SNX9Q9Y5X1 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SNX9Q9Y5X1 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC20.26■□□□□ 0.83
SNX9Q9Y5X1 PTGES2-AS1-201ENST00000443493 2100 ntBASIC20.26■□□□□ 0.83
SNX9Q9Y5X1 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC20.26■□□□□ 0.83
SNX9Q9Y5X1 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
SNX9Q9Y5X1 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC20.26■□□□□ 0.83
SNX9Q9Y5X1 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
SNX9Q9Y5X1 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SNX9Q9Y5X1 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
SNX9Q9Y5X1 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC20.25■□□□□ 0.83
SNX9Q9Y5X1 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC20.25■□□□□ 0.83
SNX9Q9Y5X1 TMPOP1-202ENST00000424642 1267 ntBASIC20.25■□□□□ 0.83
SNX9Q9Y5X1 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC20.25■□□□□ 0.83
SNX9Q9Y5X1 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC20.25■□□□□ 0.83
SNX9Q9Y5X1 MIR4674-201ENST00000582457 87 ntBASIC20.25■□□□□ 0.83
SNX9Q9Y5X1 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC20.25■□□□□ 0.83
SNX9Q9Y5X1 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SNX9Q9Y5X1 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC20.25■□□□□ 0.83
SNX9Q9Y5X1 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms