Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC36.02■■■■□ 3.36
SHROOM4Q9ULL8 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC36.02■■■■□ 3.36
SHROOM4Q9ULL8 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC36.02■■■■□ 3.36
SHROOM4Q9ULL8 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC36.02■■■■□ 3.36
SHROOM4Q9ULL8 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC36.02■■■■□ 3.36
SHROOM4Q9ULL8 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC36.02■■■■□ 3.36
SHROOM4Q9ULL8 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC36.01■■■■□ 3.36
SHROOM4Q9ULL8 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC36.01■■■■□ 3.36
SHROOM4Q9ULL8 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC36.01■■■■□ 3.36
SHROOM4Q9ULL8 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC36.01■■■■□ 3.36
SHROOM4Q9ULL8 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC36.01■■■■□ 3.36
SHROOM4Q9ULL8 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC36.01■■■■□ 3.36
SHROOM4Q9ULL8 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC36.01■■■■□ 3.36
SHROOM4Q9ULL8 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC36.01■■■■□ 3.36
SHROOM4Q9ULL8 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC36.01■■■■□ 3.36
SHROOM4Q9ULL8 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC36.01■■■■□ 3.36
SHROOM4Q9ULL8 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC36.01■■■■□ 3.35
SHROOM4Q9ULL8 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC36.01■■■■□ 3.35
SHROOM4Q9ULL8 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC36.01■■■■□ 3.35
SHROOM4Q9ULL8 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC36.01■■■■□ 3.35
SHROOM4Q9ULL8 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC36.01■■■■□ 3.35
SHROOM4Q9ULL8 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC36.01■■■■□ 3.35
SHROOM4Q9ULL8 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC36.01■■■■□ 3.35
SHROOM4Q9ULL8 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC36■■■■□ 3.35
SHROOM4Q9ULL8 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC36■■■■□ 3.35
SHROOM4Q9ULL8 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC36■■■■□ 3.35
SHROOM4Q9ULL8 CIB2-208ENST00000560618 804 ntTSL 2 BASIC36■■■■□ 3.35
SHROOM4Q9ULL8 AC012615.1-201ENST00000565797 1299 ntBASIC36■■■■□ 3.35
SHROOM4Q9ULL8 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC36■■■■□ 3.35
SHROOM4Q9ULL8 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC36■■■■□ 3.35
SHROOM4Q9ULL8 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC36■■■■□ 3.35
SHROOM4Q9ULL8 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC36■■■■□ 3.35
SHROOM4Q9ULL8 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC36■■■■□ 3.35
SHROOM4Q9ULL8 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC36■■■■□ 3.35
SHROOM4Q9ULL8 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC36■■■■□ 3.35
SHROOM4Q9ULL8 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC35.99■■■■□ 3.35
SHROOM4Q9ULL8 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC35.99■■■■□ 3.35
SHROOM4Q9ULL8 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC35.99■■■■□ 3.35
SHROOM4Q9ULL8 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC35.99■■■■□ 3.35
SHROOM4Q9ULL8 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC35.99■■■■□ 3.35
SHROOM4Q9ULL8 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC35.99■■■■□ 3.35
SHROOM4Q9ULL8 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC35.99■■■■□ 3.35
SHROOM4Q9ULL8 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC35.99■■■■□ 3.35
SHROOM4Q9ULL8 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC35.99■■■■□ 3.35
SHROOM4Q9ULL8 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC35.99■■■■□ 3.35
SHROOM4Q9ULL8 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC35.99■■■■□ 3.35
SHROOM4Q9ULL8 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC35.98■■■■□ 3.35
SHROOM4Q9ULL8 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC35.98■■■■□ 3.35
SHROOM4Q9ULL8 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC35.98■■■■□ 3.35
SHROOM4Q9ULL8 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC35.98■■■■□ 3.35
SHROOM4Q9ULL8 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC35.98■■■■□ 3.35
SHROOM4Q9ULL8 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC35.98■■■■□ 3.35
SHROOM4Q9ULL8 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC35.98■■■■□ 3.35
SHROOM4Q9ULL8 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC35.98■■■■□ 3.35
SHROOM4Q9ULL8 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC35.98■■■■□ 3.35
SHROOM4Q9ULL8 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC35.98■■■■□ 3.35
SHROOM4Q9ULL8 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC35.98■■■■□ 3.35
SHROOM4Q9ULL8 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC35.98■■■■□ 3.35
SHROOM4Q9ULL8 BX640515.1-201ENST00000617215 977 ntBASIC35.98■■■■□ 3.35
SHROOM4Q9ULL8 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC35.98■■■■□ 3.35
SHROOM4Q9ULL8 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC35.98■■■■□ 3.35
SHROOM4Q9ULL8 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC35.97■■■■□ 3.35
SHROOM4Q9ULL8 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC35.97■■■■□ 3.35
SHROOM4Q9ULL8 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC35.97■■■■□ 3.35
SHROOM4Q9ULL8 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC35.97■■■■□ 3.35
SHROOM4Q9ULL8 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC35.97■■■■□ 3.35
SHROOM4Q9ULL8 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC35.97■■■■□ 3.35
SHROOM4Q9ULL8 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC35.97■■■■□ 3.35
SHROOM4Q9ULL8 TEX30-205ENST00000376029 959 ntTSL 2 BASIC35.97■■■■□ 3.35
SHROOM4Q9ULL8 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC35.97■■■■□ 3.35
SHROOM4Q9ULL8 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC35.97■■■■□ 3.35
SHROOM4Q9ULL8 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC35.97■■■■□ 3.35
SHROOM4Q9ULL8 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC35.97■■■■□ 3.35
SHROOM4Q9ULL8 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC35.96■■■■□ 3.35
SHROOM4Q9ULL8 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC35.96■■■■□ 3.35
SHROOM4Q9ULL8 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC35.96■■■■□ 3.35
SHROOM4Q9ULL8 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC35.96■■■■□ 3.35
SHROOM4Q9ULL8 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC35.96■■■■□ 3.35
SHROOM4Q9ULL8 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC35.96■■■■□ 3.35
SHROOM4Q9ULL8 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC35.96■■■■□ 3.35
SHROOM4Q9ULL8 AC092597.1-201ENST00000487352 616 ntBASIC35.96■■■■□ 3.35
SHROOM4Q9ULL8 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC35.96■■■■□ 3.35
SHROOM4Q9ULL8 AC120114.3-201ENST00000611923 658 ntBASIC35.96■■■■□ 3.35
SHROOM4Q9ULL8 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC35.96■■■■□ 3.35
SHROOM4Q9ULL8 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC35.96■■■■□ 3.35
SHROOM4Q9ULL8 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC35.96■■■■□ 3.35
SHROOM4Q9ULL8 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC35.96■■■■□ 3.35
SHROOM4Q9ULL8 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC35.96■■■■□ 3.35
SHROOM4Q9ULL8 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC35.96■■■■□ 3.35
SHROOM4Q9ULL8 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC35.96■■■■□ 3.35
SHROOM4Q9ULL8 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC35.96■■■■□ 3.35
SHROOM4Q9ULL8 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC35.96■■■■□ 3.35
SHROOM4Q9ULL8 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC35.96■■■■□ 3.35
SHROOM4Q9ULL8 LINC01521-201ENST00000504184 1943 ntBASIC35.95■■■■□ 3.35
SHROOM4Q9ULL8 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC35.95■■■■□ 3.35
SHROOM4Q9ULL8 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC35.95■■■■□ 3.35
SHROOM4Q9ULL8 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC35.95■■■■□ 3.35
SHROOM4Q9ULL8 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC35.95■■■■□ 3.35
SHROOM4Q9ULL8 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC35.95■■■■□ 3.35
SHROOM4Q9ULL8 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC35.95■■■■□ 3.35
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms