Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
CLCF1Q9UBD9 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC16.87■□□□□ 0.29
CLCF1Q9UBD9 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
CLCF1Q9UBD9 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CLCF1Q9UBD9 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC16.87■□□□□ 0.29
CLCF1Q9UBD9 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC16.87■□□□□ 0.29
CLCF1Q9UBD9 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
CLCF1Q9UBD9 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC16.87■□□□□ 0.29
CLCF1Q9UBD9 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC16.87■□□□□ 0.29
CLCF1Q9UBD9 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC16.87■□□□□ 0.29
CLCF1Q9UBD9 KRT8P3-201ENST00000519669 1449 ntBASIC16.87■□□□□ 0.29
CLCF1Q9UBD9 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC16.86■□□□□ 0.29
CLCF1Q9UBD9 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC16.86■□□□□ 0.29
CLCF1Q9UBD9 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
CLCF1Q9UBD9 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
CLCF1Q9UBD9 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC16.86■□□□□ 0.29
CLCF1Q9UBD9 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC16.86■□□□□ 0.29
CLCF1Q9UBD9 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC16.86■□□□□ 0.29
CLCF1Q9UBD9 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
CLCF1Q9UBD9 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
CLCF1Q9UBD9 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CLCF1Q9UBD9 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC16.86■□□□□ 0.29
CLCF1Q9UBD9 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CLCF1Q9UBD9 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC16.86■□□□□ 0.29
CLCF1Q9UBD9 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
CLCF1Q9UBD9 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CLCF1Q9UBD9 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC16.86■□□□□ 0.29
CLCF1Q9UBD9 GUK1-204ENST00000366721 689 ntTSL 3 BASIC16.86■□□□□ 0.29
CLCF1Q9UBD9 AP000523.1-201ENST00000398242 1049 ntBASIC16.86■□□□□ 0.29
CLCF1Q9UBD9 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC16.86■□□□□ 0.29
CLCF1Q9UBD9 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC16.86■□□□□ 0.29
CLCF1Q9UBD9 AC009947.2-201ENST00000444014 672 ntBASIC16.86■□□□□ 0.29
CLCF1Q9UBD9 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
CLCF1Q9UBD9 RNF146-204ENST00000476956 884 ntTSL 2 BASIC16.86■□□□□ 0.29
CLCF1Q9UBD9 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
CLCF1Q9UBD9 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC16.86■□□□□ 0.29
CLCF1Q9UBD9 TPM1-226ENST00000560959 925 ntTSL 2 BASIC16.86■□□□□ 0.29
CLCF1Q9UBD9 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC16.86■□□□□ 0.29
CLCF1Q9UBD9 NEK4P2-201ENST00000580004 1012 ntBASIC16.86■□□□□ 0.29
CLCF1Q9UBD9 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC16.86■□□□□ 0.29
CLCF1Q9UBD9 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CLCF1Q9UBD9 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
CLCF1Q9UBD9 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CLCF1Q9UBD9 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
CLCF1Q9UBD9 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CLCF1Q9UBD9 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CLCF1Q9UBD9 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
CLCF1Q9UBD9 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CLCF1Q9UBD9 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
CLCF1Q9UBD9 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
CLCF1Q9UBD9 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
CLCF1Q9UBD9 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC16.85■□□□□ 0.29
CLCF1Q9UBD9 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC16.85■□□□□ 0.29
CLCF1Q9UBD9 GPAT2P1-201ENST00000444924 1672 ntBASIC16.85■□□□□ 0.29
CLCF1Q9UBD9 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CLCF1Q9UBD9 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
CLCF1Q9UBD9 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CLCF1Q9UBD9 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
CLCF1Q9UBD9 ADM-207ENST00000530439 1839 ntTSL 2 BASIC16.85■□□□□ 0.29
CLCF1Q9UBD9 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CLCF1Q9UBD9 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
CLCF1Q9UBD9 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CLCF1Q9UBD9 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC16.85■□□□□ 0.29
CLCF1Q9UBD9 Telomerase-vert.1-201ENST00000363312 438 ntBASIC16.85■□□□□ 0.29
CLCF1Q9UBD9 ILF2-202ENST00000368681 726 ntTSL 2 BASIC16.85■□□□□ 0.29
CLCF1Q9UBD9 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CLCF1Q9UBD9 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC16.85■□□□□ 0.29
CLCF1Q9UBD9 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC16.85■□□□□ 0.29
CLCF1Q9UBD9 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
CLCF1Q9UBD9 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
CLCF1Q9UBD9 AL441883.1-201ENST00000566170 1045 ntBASIC16.85■□□□□ 0.29
CLCF1Q9UBD9 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC16.85■□□□□ 0.29
CLCF1Q9UBD9 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CLCF1Q9UBD9 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC16.85■□□□□ 0.29
CLCF1Q9UBD9 CR769767.2-201ENST00000622735 460 ntBASIC16.85■□□□□ 0.29
CLCF1Q9UBD9 MYC-208ENST00000641036 567 ntBASIC16.85■□□□□ 0.29
CLCF1Q9UBD9 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
CLCF1Q9UBD9 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CLCF1Q9UBD9 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
CLCF1Q9UBD9 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC16.85■□□□□ 0.29
CLCF1Q9UBD9 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
CLCF1Q9UBD9 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC16.85■□□□□ 0.29
CLCF1Q9UBD9 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC16.85■□□□□ 0.29
CLCF1Q9UBD9 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
CLCF1Q9UBD9 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
CLCF1Q9UBD9 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CLCF1Q9UBD9 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CLCF1Q9UBD9 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
CLCF1Q9UBD9 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CLCF1Q9UBD9 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
CLCF1Q9UBD9 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
CLCF1Q9UBD9 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC16.84■□□□□ 0.29
CLCF1Q9UBD9 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
CLCF1Q9UBD9 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
CLCF1Q9UBD9 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC16.84■□□□□ 0.29
CLCF1Q9UBD9 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CLCF1Q9UBD9 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC16.84■□□□□ 0.29
CLCF1Q9UBD9 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC16.84■□□□□ 0.29
CLCF1Q9UBD9 AC092647.4-201ENST00000457211 535 ntBASIC16.84■□□□□ 0.29
CLCF1Q9UBD9 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC16.84■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms