Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC17.87■□□□□ 0.45
PTCHD1Q96NR3 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
PTCHD1Q96NR3 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
PTCHD1Q96NR3 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
PTCHD1Q96NR3 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
PTCHD1Q96NR3 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
PTCHD1Q96NR3 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
PTCHD1Q96NR3 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
PTCHD1Q96NR3 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
PTCHD1Q96NR3 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
PTCHD1Q96NR3 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
PTCHD1Q96NR3 TSPY14P-201ENST00000303979 915 ntBASIC17.87■□□□□ 0.45
PTCHD1Q96NR3 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC17.87■□□□□ 0.45
PTCHD1Q96NR3 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC17.87■□□□□ 0.45
PTCHD1Q96NR3 CCR12P-201ENST00000446203 998 ntBASIC17.87■□□□□ 0.45
PTCHD1Q96NR3 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC17.87■□□□□ 0.45
PTCHD1Q96NR3 AC128688.1-201ENST00000487626 519 ntBASIC17.87■□□□□ 0.45
PTCHD1Q96NR3 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
PTCHD1Q96NR3 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC17.87■□□□□ 0.45
PTCHD1Q96NR3 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC17.87■□□□□ 0.45
PTCHD1Q96NR3 AC145285.6-201ENST00000604632 637 ntBASIC17.87■□□□□ 0.45
PTCHD1Q96NR3 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC17.87■□□□□ 0.45
PTCHD1Q96NR3 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC17.87■□□□□ 0.45
PTCHD1Q96NR3 AC097493.4-201ENST00000641197 219 ntBASIC17.87■□□□□ 0.45
PTCHD1Q96NR3 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
PTCHD1Q96NR3 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
PTCHD1Q96NR3 KRT18P22-201ENST00000402024 1347 ntBASIC17.87■□□□□ 0.45
PTCHD1Q96NR3 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
PTCHD1Q96NR3 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
PTCHD1Q96NR3 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
PTCHD1Q96NR3 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
PTCHD1Q96NR3 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
PTCHD1Q96NR3 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
PTCHD1Q96NR3 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
PTCHD1Q96NR3 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
PTCHD1Q96NR3 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
PTCHD1Q96NR3 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC17.86■□□□□ 0.45
PTCHD1Q96NR3 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC17.86■□□□□ 0.45
PTCHD1Q96NR3 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
PTCHD1Q96NR3 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
PTCHD1Q96NR3 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
PTCHD1Q96NR3 SLC25A1P2-201ENST00000430693 912 ntBASIC17.86■□□□□ 0.45
PTCHD1Q96NR3 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC17.86■□□□□ 0.45
PTCHD1Q96NR3 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC17.86■□□□□ 0.45
PTCHD1Q96NR3 AC012306.2-201ENST00000609350 630 ntBASIC17.86■□□□□ 0.45
PTCHD1Q96NR3 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
PTCHD1Q96NR3 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC17.86■□□□□ 0.45
PTCHD1Q96NR3 AC116562.4-202ENST00000641738 218 ntBASIC17.86■□□□□ 0.45
PTCHD1Q96NR3 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
PTCHD1Q96NR3 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
PTCHD1Q96NR3 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
PTCHD1Q96NR3 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
PTCHD1Q96NR3 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC17.86■□□□□ 0.45
PTCHD1Q96NR3 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
PTCHD1Q96NR3 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
PTCHD1Q96NR3 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC17.86■□□□□ 0.45
PTCHD1Q96NR3 AC141586.3-201ENST00000562166 1838 ntBASIC17.86■□□□□ 0.45
PTCHD1Q96NR3 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC17.86■□□□□ 0.45
PTCHD1Q96NR3 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
PTCHD1Q96NR3 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
PTCHD1Q96NR3 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
PTCHD1Q96NR3 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
PTCHD1Q96NR3 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
PTCHD1Q96NR3 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
PTCHD1Q96NR3 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC17.85■□□□□ 0.45
PTCHD1Q96NR3 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC17.85■□□□□ 0.45
PTCHD1Q96NR3 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
PTCHD1Q96NR3 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC17.85■□□□□ 0.45
PTCHD1Q96NR3 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
PTCHD1Q96NR3 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
PTCHD1Q96NR3 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
PTCHD1Q96NR3 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
PTCHD1Q96NR3 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
PTCHD1Q96NR3 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
PTCHD1Q96NR3 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
PTCHD1Q96NR3 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
PTCHD1Q96NR3 CA15P1-201ENST00000481698 905 ntBASIC17.85■□□□□ 0.45
PTCHD1Q96NR3 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC17.85■□□□□ 0.45
PTCHD1Q96NR3 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC17.85■□□□□ 0.45
PTCHD1Q96NR3 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
PTCHD1Q96NR3 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC17.85■□□□□ 0.45
PTCHD1Q96NR3 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC17.85■□□□□ 0.45
PTCHD1Q96NR3 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC17.85■□□□□ 0.45
PTCHD1Q96NR3 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
PTCHD1Q96NR3 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
PTCHD1Q96NR3 CLN6-221ENST00000637494 765 ntTSL 5 BASIC17.85■□□□□ 0.45
PTCHD1Q96NR3 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
PTCHD1Q96NR3 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
PTCHD1Q96NR3 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
PTCHD1Q96NR3 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC17.84■□□□□ 0.45
PTCHD1Q96NR3 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
PTCHD1Q96NR3 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
PTCHD1Q96NR3 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
PTCHD1Q96NR3 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
PTCHD1Q96NR3 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
PTCHD1Q96NR3 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
PTCHD1Q96NR3 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
PTCHD1Q96NR3 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC17.84■□□□□ 0.45
PTCHD1Q96NR3 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
PTCHD1Q96NR3 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC17.84■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 52.6 ms