Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
HMGB4Q8WW32 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC19■□□□□ 0.63
HMGB4Q8WW32 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC19■□□□□ 0.63
HMGB4Q8WW32 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
HMGB4Q8WW32 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC19■□□□□ 0.63
HMGB4Q8WW32 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC19■□□□□ 0.63
HMGB4Q8WW32 MCCD1P1-208ENST00000445732 328 ntBASIC19■□□□□ 0.63
HMGB4Q8WW32 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC19■□□□□ 0.63
HMGB4Q8WW32 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
HMGB4Q8WW32 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC19■□□□□ 0.63
HMGB4Q8WW32 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC19■□□□□ 0.63
HMGB4Q8WW32 NPAP1P7-201ENST00000613027 823 ntBASIC19■□□□□ 0.63
HMGB4Q8WW32 IRF5-214ENST00000613821 595 ntTSL 5 BASIC19■□□□□ 0.63
HMGB4Q8WW32 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
HMGB4Q8WW32 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
HMGB4Q8WW32 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC19■□□□□ 0.63
HMGB4Q8WW32 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC19■□□□□ 0.63
HMGB4Q8WW32 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
HMGB4Q8WW32 LBX2-AS1-202ENST00000603175 2083 ntBASIC19■□□□□ 0.63
HMGB4Q8WW32 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC19■□□□□ 0.63
HMGB4Q8WW32 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC19■□□□□ 0.63
HMGB4Q8WW32 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC19■□□□□ 0.63
HMGB4Q8WW32 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC19■□□□□ 0.63
HMGB4Q8WW32 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC19■□□□□ 0.63
HMGB4Q8WW32 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC19■□□□□ 0.63
HMGB4Q8WW32 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
HMGB4Q8WW32 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC19■□□□□ 0.63
HMGB4Q8WW32 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
HMGB4Q8WW32 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
HMGB4Q8WW32 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC18.99■□□□□ 0.63
HMGB4Q8WW32 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
HMGB4Q8WW32 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
HMGB4Q8WW32 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC18.99■□□□□ 0.63
HMGB4Q8WW32 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC18.99■□□□□ 0.63
HMGB4Q8WW32 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
HMGB4Q8WW32 PRELID1P1-202ENST00000567272 903 ntBASIC18.99■□□□□ 0.63
HMGB4Q8WW32 MIR3652-201ENST00000579335 131 ntBASIC18.99■□□□□ 0.63
HMGB4Q8WW32 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC18.99■□□□□ 0.63
HMGB4Q8WW32 AC092329.2-201ENST00000598402 547 ntBASIC18.99■□□□□ 0.63
HMGB4Q8WW32 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
HMGB4Q8WW32 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC18.99■□□□□ 0.63
HMGB4Q8WW32 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC18.99■□□□□ 0.63
HMGB4Q8WW32 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC18.99■□□□□ 0.63
HMGB4Q8WW32 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC18.99■□□□□ 0.63
HMGB4Q8WW32 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
HMGB4Q8WW32 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
HMGB4Q8WW32 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC18.98■□□□□ 0.63
HMGB4Q8WW32 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC18.98■□□□□ 0.63
HMGB4Q8WW32 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC18.98■□□□□ 0.63
HMGB4Q8WW32 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
HMGB4Q8WW32 LINC01006-201ENST00000333319 2292 ntBASIC18.98■□□□□ 0.63
HMGB4Q8WW32 AC073130.3-201ENST00000624389 2278 ntBASIC18.98■□□□□ 0.63
HMGB4Q8WW32 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC18.98■□□□□ 0.63
HMGB4Q8WW32 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
HMGB4Q8WW32 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC18.98■□□□□ 0.63
HMGB4Q8WW32 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC18.98■□□□□ 0.63
HMGB4Q8WW32 MIR3180-5-201ENST00000583743 153 ntBASIC18.98■□□□□ 0.63
HMGB4Q8WW32 AC011498.5-201ENST00000592027 486 ntBASIC18.98■□□□□ 0.63
HMGB4Q8WW32 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
HMGB4Q8WW32 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
HMGB4Q8WW32 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC18.98■□□□□ 0.63
HMGB4Q8WW32 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
HMGB4Q8WW32 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC18.98■□□□□ 0.63
HMGB4Q8WW32 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
HMGB4Q8WW32 GAS2L1P1-201ENST00000420145 1480 ntBASIC18.97■□□□□ 0.63
HMGB4Q8WW32 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC18.97■□□□□ 0.63
HMGB4Q8WW32 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC18.97■□□□□ 0.63
HMGB4Q8WW32 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
HMGB4Q8WW32 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
HMGB4Q8WW32 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
HMGB4Q8WW32 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
HMGB4Q8WW32 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
HMGB4Q8WW32 GRAMD4P1-201ENST00000435181 1110 ntBASIC18.97■□□□□ 0.63
HMGB4Q8WW32 BX276092.5-203ENST00000456199 560 ntBASIC18.97■□□□□ 0.63
HMGB4Q8WW32 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC18.97■□□□□ 0.63
HMGB4Q8WW32 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC18.97■□□□□ 0.63
HMGB4Q8WW32 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC18.97■□□□□ 0.63
HMGB4Q8WW32 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC18.97■□□□□ 0.63
HMGB4Q8WW32 PRR29-207ENST00000580752 458 ntTSL 3 BASIC18.97■□□□□ 0.63
HMGB4Q8WW32 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC18.97■□□□□ 0.63
HMGB4Q8WW32 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
HMGB4Q8WW32 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC18.97■□□□□ 0.63
HMGB4Q8WW32 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC18.97■□□□□ 0.63
HMGB4Q8WW32 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC18.97■□□□□ 0.63
HMGB4Q8WW32 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
HMGB4Q8WW32 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC18.97■□□□□ 0.63
HMGB4Q8WW32 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
HMGB4Q8WW32 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC18.97■□□□□ 0.63
HMGB4Q8WW32 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HMGB4Q8WW32 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
HMGB4Q8WW32 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HMGB4Q8WW32 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC18.96■□□□□ 0.63
HMGB4Q8WW32 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC18.96■□□□□ 0.63
HMGB4Q8WW32 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HMGB4Q8WW32 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HMGB4Q8WW32 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HMGB4Q8WW32 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC18.96■□□□□ 0.63
HMGB4Q8WW32 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
HMGB4Q8WW32 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HMGB4Q8WW32 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms