Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
HDDC3Q8N4P3 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
HDDC3Q8N4P3 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
HDDC3Q8N4P3 GAS2L1P1-201ENST00000420145 1480 ntBASIC19.03■□□□□ 0.64
HDDC3Q8N4P3 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC19.03■□□□□ 0.64
HDDC3Q8N4P3 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC19.03■□□□□ 0.64
HDDC3Q8N4P3 Z82202.1-201ENST00000623446 1880 ntBASIC19.03■□□□□ 0.64
HDDC3Q8N4P3 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
HDDC3Q8N4P3 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC19.03■□□□□ 0.64
HDDC3Q8N4P3 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
HDDC3Q8N4P3 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
HDDC3Q8N4P3 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
HDDC3Q8N4P3 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC19.03■□□□□ 0.64
HDDC3Q8N4P3 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
HDDC3Q8N4P3 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC19.03■□□□□ 0.64
HDDC3Q8N4P3 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
HDDC3Q8N4P3 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC19.03■□□□□ 0.64
HDDC3Q8N4P3 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
HDDC3Q8N4P3 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC19.03■□□□□ 0.64
HDDC3Q8N4P3 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC19.03■□□□□ 0.64
HDDC3Q8N4P3 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
HDDC3Q8N4P3 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
HDDC3Q8N4P3 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
HDDC3Q8N4P3 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC19.03■□□□□ 0.64
HDDC3Q8N4P3 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
HDDC3Q8N4P3 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC19.03■□□□□ 0.64
HDDC3Q8N4P3 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC19.03■□□□□ 0.64
HDDC3Q8N4P3 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
HDDC3Q8N4P3 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
HDDC3Q8N4P3 ME2-218ENST00000640965 2476 ntTSL 5 BASIC19.02■□□□□ 0.64
HDDC3Q8N4P3 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC19.02■□□□□ 0.64
HDDC3Q8N4P3 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC19.02■□□□□ 0.64
HDDC3Q8N4P3 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
HDDC3Q8N4P3 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC19.02■□□□□ 0.64
HDDC3Q8N4P3 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC19.02■□□□□ 0.64
HDDC3Q8N4P3 VENTXP5-201ENST00000523979 775 ntBASIC19.02■□□□□ 0.64
HDDC3Q8N4P3 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
HDDC3Q8N4P3 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
HDDC3Q8N4P3 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC19.02■□□□□ 0.64
HDDC3Q8N4P3 AC116407.4-201ENST00000623319 1061 ntBASIC19.02■□□□□ 0.64
HDDC3Q8N4P3 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
HDDC3Q8N4P3 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
HDDC3Q8N4P3 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
HDDC3Q8N4P3 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
HDDC3Q8N4P3 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
HDDC3Q8N4P3 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC19.02■□□□□ 0.63
HDDC3Q8N4P3 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
HDDC3Q8N4P3 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
HDDC3Q8N4P3 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC19.02■□□□□ 0.63
HDDC3Q8N4P3 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC19.01■□□□□ 0.63
HDDC3Q8N4P3 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
HDDC3Q8N4P3 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
HDDC3Q8N4P3 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
HDDC3Q8N4P3 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
HDDC3Q8N4P3 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
HDDC3Q8N4P3 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC19.01■□□□□ 0.63
HDDC3Q8N4P3 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
HDDC3Q8N4P3 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC19.01■□□□□ 0.63
HDDC3Q8N4P3 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
HDDC3Q8N4P3 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC19.01■□□□□ 0.63
HDDC3Q8N4P3 AC125437.2-201ENST00000625180 2167 ntBASIC19.01■□□□□ 0.63
HDDC3Q8N4P3 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
HDDC3Q8N4P3 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
HDDC3Q8N4P3 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
HDDC3Q8N4P3 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
HDDC3Q8N4P3 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
HDDC3Q8N4P3 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
HDDC3Q8N4P3 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC19.01■□□□□ 0.63
HDDC3Q8N4P3 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC19.01■□□□□ 0.63
HDDC3Q8N4P3 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC19.01■□□□□ 0.63
HDDC3Q8N4P3 NEK4P2-201ENST00000580004 1012 ntBASIC19.01■□□□□ 0.63
HDDC3Q8N4P3 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC19.01■□□□□ 0.63
HDDC3Q8N4P3 CR769767.2-201ENST00000622735 460 ntBASIC19.01■□□□□ 0.63
HDDC3Q8N4P3 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
HDDC3Q8N4P3 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC19.01■□□□□ 0.63
HDDC3Q8N4P3 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
HDDC3Q8N4P3 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC19.01■□□□□ 0.63
HDDC3Q8N4P3 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC19.01■□□□□ 0.63
HDDC3Q8N4P3 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC19.01■□□□□ 0.63
HDDC3Q8N4P3 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
HDDC3Q8N4P3 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC19.01■□□□□ 0.63
HDDC3Q8N4P3 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
HDDC3Q8N4P3 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
HDDC3Q8N4P3 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC19.01■□□□□ 0.63
HDDC3Q8N4P3 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
HDDC3Q8N4P3 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC19■□□□□ 0.63
HDDC3Q8N4P3 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC19■□□□□ 0.63
HDDC3Q8N4P3 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
HDDC3Q8N4P3 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC19■□□□□ 0.63
HDDC3Q8N4P3 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC19■□□□□ 0.63
HDDC3Q8N4P3 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
HDDC3Q8N4P3 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
HDDC3Q8N4P3 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
HDDC3Q8N4P3 TP73-202ENST00000354437 2140 ntTSL 5 BASIC19■□□□□ 0.63
HDDC3Q8N4P3 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
HDDC3Q8N4P3 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
HDDC3Q8N4P3 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
HDDC3Q8N4P3 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
HDDC3Q8N4P3 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC19■□□□□ 0.63
HDDC3Q8N4P3 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC19■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms