Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
NPAS3Q8IXF0 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC19.63■□□□□ 0.73
NPAS3Q8IXF0 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
NPAS3Q8IXF0 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
NPAS3Q8IXF0 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
NPAS3Q8IXF0 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC19.63■□□□□ 0.73
NPAS3Q8IXF0 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC19.63■□□□□ 0.73
NPAS3Q8IXF0 MIR3652-201ENST00000579335 131 ntBASIC19.63■□□□□ 0.73
NPAS3Q8IXF0 PRR29-207ENST00000580752 458 ntTSL 3 BASIC19.63■□□□□ 0.73
NPAS3Q8IXF0 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC19.63■□□□□ 0.73
NPAS3Q8IXF0 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
NPAS3Q8IXF0 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
NPAS3Q8IXF0 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
NPAS3Q8IXF0 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC19.63■□□□□ 0.73
NPAS3Q8IXF0 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC19.63■□□□□ 0.73
NPAS3Q8IXF0 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC19.62■□□□□ 0.73
NPAS3Q8IXF0 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
NPAS3Q8IXF0 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC19.62■□□□□ 0.73
NPAS3Q8IXF0 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC19.62■□□□□ 0.73
NPAS3Q8IXF0 AC016734.2-201ENST00000624325 1377 ntBASIC19.62■□□□□ 0.73
NPAS3Q8IXF0 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
NPAS3Q8IXF0 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
NPAS3Q8IXF0 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
NPAS3Q8IXF0 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC19.62■□□□□ 0.73
NPAS3Q8IXF0 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC19.62■□□□□ 0.73
NPAS3Q8IXF0 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
NPAS3Q8IXF0 SEC1P-202ENST00000473944 940 ntBASIC19.62■□□□□ 0.73
NPAS3Q8IXF0 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC19.62■□□□□ 0.73
NPAS3Q8IXF0 PRELID1P1-202ENST00000567272 903 ntBASIC19.62■□□□□ 0.73
NPAS3Q8IXF0 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC19.62■□□□□ 0.73
NPAS3Q8IXF0 AL121672.3-201ENST00000608644 468 ntBASIC19.62■□□□□ 0.73
NPAS3Q8IXF0 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC19.62■□□□□ 0.73
NPAS3Q8IXF0 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC19.62■□□□□ 0.73
NPAS3Q8IXF0 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
NPAS3Q8IXF0 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
NPAS3Q8IXF0 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
NPAS3Q8IXF0 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
NPAS3Q8IXF0 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC19.61■□□□□ 0.73
NPAS3Q8IXF0 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
NPAS3Q8IXF0 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
NPAS3Q8IXF0 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
NPAS3Q8IXF0 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC19.61■□□□□ 0.73
NPAS3Q8IXF0 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
NPAS3Q8IXF0 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
NPAS3Q8IXF0 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
NPAS3Q8IXF0 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
NPAS3Q8IXF0 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC19.61■□□□□ 0.73
NPAS3Q8IXF0 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC19.61■□□□□ 0.73
NPAS3Q8IXF0 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC19.61■□□□□ 0.73
NPAS3Q8IXF0 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC19.61■□□□□ 0.73
NPAS3Q8IXF0 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
NPAS3Q8IXF0 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
NPAS3Q8IXF0 BX276092.5-203ENST00000456199 560 ntBASIC19.61■□□□□ 0.73
NPAS3Q8IXF0 SKP2-204ENST00000508514 821 ntTSL 3 BASIC19.61■□□□□ 0.73
NPAS3Q8IXF0 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC19.61■□□□□ 0.73
NPAS3Q8IXF0 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC19.61■□□□□ 0.73
NPAS3Q8IXF0 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC19.61■□□□□ 0.73
NPAS3Q8IXF0 MIR3180-1-201ENST00000580374 94 ntBASIC19.61■□□□□ 0.73
NPAS3Q8IXF0 MIR3180-3-201ENST00000584616 94 ntBASIC19.61■□□□□ 0.73
NPAS3Q8IXF0 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC19.61■□□□□ 0.73
NPAS3Q8IXF0 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
NPAS3Q8IXF0 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
NPAS3Q8IXF0 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC19.61■□□□□ 0.73
NPAS3Q8IXF0 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
NPAS3Q8IXF0 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
NPAS3Q8IXF0 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
NPAS3Q8IXF0 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
NPAS3Q8IXF0 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC19.61■□□□□ 0.73
NPAS3Q8IXF0 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC19.6■□□□□ 0.73
NPAS3Q8IXF0 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC19.6■□□□□ 0.73
NPAS3Q8IXF0 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
NPAS3Q8IXF0 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC19.6■□□□□ 0.73
NPAS3Q8IXF0 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC19.6■□□□□ 0.73
NPAS3Q8IXF0 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
NPAS3Q8IXF0 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
NPAS3Q8IXF0 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
NPAS3Q8IXF0 GRAMD4P1-201ENST00000435181 1110 ntBASIC19.6■□□□□ 0.73
NPAS3Q8IXF0 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC19.6■□□□□ 0.73
NPAS3Q8IXF0 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC19.6■□□□□ 0.73
NPAS3Q8IXF0 SDHD-206ENST00000528182 754 ntTSL 3 BASIC19.6■□□□□ 0.73
NPAS3Q8IXF0 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC19.6■□□□□ 0.73
NPAS3Q8IXF0 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
NPAS3Q8IXF0 AC079602.3-201ENST00000623931 403 ntBASIC19.6■□□□□ 0.73
NPAS3Q8IXF0 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
NPAS3Q8IXF0 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
NPAS3Q8IXF0 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC19.6■□□□□ 0.73
NPAS3Q8IXF0 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
NPAS3Q8IXF0 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC19.6■□□□□ 0.73
NPAS3Q8IXF0 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC19.6■□□□□ 0.73
NPAS3Q8IXF0 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC19.6■□□□□ 0.73
NPAS3Q8IXF0 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
NPAS3Q8IXF0 LBX2-AS1-202ENST00000603175 2083 ntBASIC19.6■□□□□ 0.73
NPAS3Q8IXF0 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
NPAS3Q8IXF0 KRT8P3-201ENST00000519669 1449 ntBASIC19.59■□□□□ 0.73
NPAS3Q8IXF0 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
NPAS3Q8IXF0 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
NPAS3Q8IXF0 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC19.59■□□□□ 0.73
NPAS3Q8IXF0 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
NPAS3Q8IXF0 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
NPAS3Q8IXF0 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms