Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC15.85■□□□□ 0.13
CCDC28AQ8IWP9 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC15.85■□□□□ 0.13
CCDC28AQ8IWP9 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
CCDC28AQ8IWP9 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
CCDC28AQ8IWP9 CROCCP2-202ENST00000412962 2773 ntBASIC15.85■□□□□ 0.13
CCDC28AQ8IWP9 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC15.85■□□□□ 0.13
CCDC28AQ8IWP9 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
CCDC28AQ8IWP9 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
CCDC28AQ8IWP9 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC15.85■□□□□ 0.13
CCDC28AQ8IWP9 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC15.85■□□□□ 0.13
CCDC28AQ8IWP9 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC15.85■□□□□ 0.13
CCDC28AQ8IWP9 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC15.85■□□□□ 0.13
CCDC28AQ8IWP9 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
CCDC28AQ8IWP9 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
CCDC28AQ8IWP9 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
CCDC28AQ8IWP9 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
CCDC28AQ8IWP9 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
CCDC28AQ8IWP9 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC15.85■□□□□ 0.13
CCDC28AQ8IWP9 PCDHA1-201ENST00000378133 2726 ntBASIC15.85■□□□□ 0.13
CCDC28AQ8IWP9 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC15.85■□□□□ 0.13
CCDC28AQ8IWP9 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC15.85■□□□□ 0.13
CCDC28AQ8IWP9 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC15.85■□□□□ 0.13
CCDC28AQ8IWP9 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
CCDC28AQ8IWP9 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
CCDC28AQ8IWP9 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
CCDC28AQ8IWP9 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
CCDC28AQ8IWP9 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC15.84■□□□□ 0.13
CCDC28AQ8IWP9 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
CCDC28AQ8IWP9 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC15.84■□□□□ 0.13
CCDC28AQ8IWP9 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
CCDC28AQ8IWP9 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
CCDC28AQ8IWP9 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
CCDC28AQ8IWP9 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC15.84■□□□□ 0.13
CCDC28AQ8IWP9 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
CCDC28AQ8IWP9 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
CCDC28AQ8IWP9 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
CCDC28AQ8IWP9 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
CCDC28AQ8IWP9 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
CCDC28AQ8IWP9 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
CCDC28AQ8IWP9 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
CCDC28AQ8IWP9 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
CCDC28AQ8IWP9 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
CCDC28AQ8IWP9 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC15.84■□□□□ 0.13
CCDC28AQ8IWP9 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
CCDC28AQ8IWP9 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC15.84■□□□□ 0.13
CCDC28AQ8IWP9 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
CCDC28AQ8IWP9 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
CCDC28AQ8IWP9 AC010525.1-201ENST00000585559 441 ntBASIC15.84■□□□□ 0.13
CCDC28AQ8IWP9 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC15.84■□□□□ 0.13
CCDC28AQ8IWP9 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC15.84■□□□□ 0.13
CCDC28AQ8IWP9 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
CCDC28AQ8IWP9 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC15.84■□□□□ 0.13
CCDC28AQ8IWP9 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
CCDC28AQ8IWP9 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
CCDC28AQ8IWP9 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC15.84■□□□□ 0.13
CCDC28AQ8IWP9 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC15.84■□□□□ 0.13
CCDC28AQ8IWP9 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC15.84■□□□□ 0.13
CCDC28AQ8IWP9 PXK-206ENST00000463280 2825 ntTSL 2 BASIC15.84■□□□□ 0.13
CCDC28AQ8IWP9 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC15.84■□□□□ 0.13
CCDC28AQ8IWP9 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
CCDC28AQ8IWP9 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
CCDC28AQ8IWP9 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
CCDC28AQ8IWP9 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
CCDC28AQ8IWP9 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC15.84■□□□□ 0.13
CCDC28AQ8IWP9 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
CCDC28AQ8IWP9 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
CCDC28AQ8IWP9 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.13
CCDC28AQ8IWP9 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
CCDC28AQ8IWP9 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.13
CCDC28AQ8IWP9 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
CCDC28AQ8IWP9 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
CCDC28AQ8IWP9 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
CCDC28AQ8IWP9 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC15.83■□□□□ 0.12
CCDC28AQ8IWP9 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
CCDC28AQ8IWP9 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
CCDC28AQ8IWP9 SERBP1P1-201ENST00000396021 1160 ntBASIC15.83■□□□□ 0.12
CCDC28AQ8IWP9 AC011298.3-201ENST00000615796 283 ntBASIC15.83■□□□□ 0.12
CCDC28AQ8IWP9 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC15.83■□□□□ 0.12
CCDC28AQ8IWP9 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
CCDC28AQ8IWP9 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC15.83■□□□□ 0.12
CCDC28AQ8IWP9 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
CCDC28AQ8IWP9 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
CCDC28AQ8IWP9 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
CCDC28AQ8IWP9 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC15.83■□□□□ 0.12
CCDC28AQ8IWP9 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
CCDC28AQ8IWP9 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
CCDC28AQ8IWP9 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
CCDC28AQ8IWP9 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
CCDC28AQ8IWP9 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
CCDC28AQ8IWP9 UBALD1-205ENST00000590891 2641 ntBASIC15.82■□□□□ 0.12
CCDC28AQ8IWP9 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CCDC28AQ8IWP9 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
CCDC28AQ8IWP9 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
CCDC28AQ8IWP9 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CCDC28AQ8IWP9 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
CCDC28AQ8IWP9 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
CCDC28AQ8IWP9 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CCDC28AQ8IWP9 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC15.82■□□□□ 0.12
CCDC28AQ8IWP9 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CCDC28AQ8IWP9 MAU2-201ENST00000262815 4994 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms