Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
CCDC60Q8IWA6 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
CCDC60Q8IWA6 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CCDC60Q8IWA6 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CCDC60Q8IWA6 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
CCDC60Q8IWA6 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC21.09■□□□□ 0.97
CCDC60Q8IWA6 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CCDC60Q8IWA6 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC21.09■□□□□ 0.97
CCDC60Q8IWA6 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC21.09■□□□□ 0.97
CCDC60Q8IWA6 RNF146-204ENST00000476956 884 ntTSL 2 BASIC21.09■□□□□ 0.97
CCDC60Q8IWA6 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CCDC60Q8IWA6 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC21.09■□□□□ 0.97
CCDC60Q8IWA6 TPM1-226ENST00000560959 925 ntTSL 2 BASIC21.09■□□□□ 0.97
CCDC60Q8IWA6 AC087388.1-201ENST00000571370 1112 ntBASIC21.09■□□□□ 0.97
CCDC60Q8IWA6 NEK4P2-201ENST00000580004 1012 ntBASIC21.09■□□□□ 0.97
CCDC60Q8IWA6 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC21.09■□□□□ 0.97
CCDC60Q8IWA6 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC21.09■□□□□ 0.97
CCDC60Q8IWA6 AL031432.5-201ENST00000641059 760 ntBASIC21.09■□□□□ 0.97
CCDC60Q8IWA6 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CCDC60Q8IWA6 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
CCDC60Q8IWA6 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
CCDC60Q8IWA6 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC21.09■□□□□ 0.97
CCDC60Q8IWA6 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
CCDC60Q8IWA6 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC21.08■□□□□ 0.97
CCDC60Q8IWA6 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.97
CCDC60Q8IWA6 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC21.08■□□□□ 0.97
CCDC60Q8IWA6 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.97
CCDC60Q8IWA6 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC21.08■□□□□ 0.97
CCDC60Q8IWA6 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC21.08■□□□□ 0.97
CCDC60Q8IWA6 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
CCDC60Q8IWA6 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC21.08■□□□□ 0.97
CCDC60Q8IWA6 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC21.08■□□□□ 0.97
CCDC60Q8IWA6 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CCDC60Q8IWA6 AC140113.3-201ENST00000605663 199 ntBASIC21.08■□□□□ 0.97
CCDC60Q8IWA6 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC21.08■□□□□ 0.97
CCDC60Q8IWA6 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
CCDC60Q8IWA6 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.96
CCDC60Q8IWA6 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC21.08■□□□□ 0.96
CCDC60Q8IWA6 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.96
CCDC60Q8IWA6 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC21.08■□□□□ 0.96
CCDC60Q8IWA6 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC21.08■□□□□ 0.96
CCDC60Q8IWA6 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.96
CCDC60Q8IWA6 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CCDC60Q8IWA6 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CCDC60Q8IWA6 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC21.07■□□□□ 0.96
CCDC60Q8IWA6 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CCDC60Q8IWA6 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
CCDC60Q8IWA6 FP475955.4-201ENST00000623131 1990 ntBASIC21.07■□□□□ 0.96
CCDC60Q8IWA6 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CCDC60Q8IWA6 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC21.07■□□□□ 0.96
CCDC60Q8IWA6 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
CCDC60Q8IWA6 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CCDC60Q8IWA6 SAPCD2P2-201ENST00000431719 1174 ntBASIC21.07■□□□□ 0.96
CCDC60Q8IWA6 MCCD1P1-208ENST00000445732 328 ntBASIC21.07■□□□□ 0.96
CCDC60Q8IWA6 KRT18P38-201ENST00000449496 1282 ntBASIC21.07■□□□□ 0.96
CCDC60Q8IWA6 AC092647.4-201ENST00000457211 535 ntBASIC21.07■□□□□ 0.96
CCDC60Q8IWA6 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC21.07■□□□□ 0.96
CCDC60Q8IWA6 LINC01238-205ENST00000567549 1107 ntBASIC21.07■□□□□ 0.96
CCDC60Q8IWA6 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC21.07■□□□□ 0.96
CCDC60Q8IWA6 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC21.07■□□□□ 0.96
CCDC60Q8IWA6 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC21.07■□□□□ 0.96
CCDC60Q8IWA6 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC21.07■□□□□ 0.96
CCDC60Q8IWA6 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CCDC60Q8IWA6 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC21.07■□□□□ 0.96
CCDC60Q8IWA6 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CCDC60Q8IWA6 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CCDC60Q8IWA6 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC21.07■□□□□ 0.96
CCDC60Q8IWA6 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CCDC60Q8IWA6 AL512353.2-201ENST00000448759 1962 ntBASIC21.06■□□□□ 0.96
CCDC60Q8IWA6 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC21.06■□□□□ 0.96
CCDC60Q8IWA6 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC21.06■□□□□ 0.96
CCDC60Q8IWA6 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC21.06■□□□□ 0.96
CCDC60Q8IWA6 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
CCDC60Q8IWA6 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC21.06■□□□□ 0.96
CCDC60Q8IWA6 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC21.06■□□□□ 0.96
CCDC60Q8IWA6 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC60Q8IWA6 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC21.06■□□□□ 0.96
CCDC60Q8IWA6 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC60Q8IWA6 AL359075.1-203ENST00000462729 1002 ntBASIC21.06■□□□□ 0.96
CCDC60Q8IWA6 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC60Q8IWA6 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC60Q8IWA6 GCSHP2-201ENST00000560971 527 ntBASIC21.06■□□□□ 0.96
CCDC60Q8IWA6 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC60Q8IWA6 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC21.06■□□□□ 0.96
CCDC60Q8IWA6 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC21.06■□□□□ 0.96
CCDC60Q8IWA6 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC60Q8IWA6 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC60Q8IWA6 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC60Q8IWA6 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC21.06■□□□□ 0.96
CCDC60Q8IWA6 KATNBL1P6-202ENST00000562413 1466 ntBASIC21.06■□□□□ 0.96
CCDC60Q8IWA6 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC21.06■□□□□ 0.96
CCDC60Q8IWA6 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC21.06■□□□□ 0.96
CCDC60Q8IWA6 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
CCDC60Q8IWA6 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
CCDC60Q8IWA6 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
CCDC60Q8IWA6 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
CCDC60Q8IWA6 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC21.05■□□□□ 0.96
CCDC60Q8IWA6 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CCDC60Q8IWA6 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CCDC60Q8IWA6 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 91.4 ms