Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 AC008622.2-201ENST00000617006 1229 ntBASIC23.24■■□□□ 1.31
USP48Q86UV5 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
USP48Q86UV5 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC23.24■■□□□ 1.31
USP48Q86UV5 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC23.24■■□□□ 1.31
USP48Q86UV5 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC23.24■■□□□ 1.31
USP48Q86UV5 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC23.24■■□□□ 1.31
USP48Q86UV5 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
USP48Q86UV5 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC23.24■■□□□ 1.31
USP48Q86UV5 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC23.23■■□□□ 1.31
USP48Q86UV5 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
USP48Q86UV5 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
USP48Q86UV5 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC23.23■■□□□ 1.31
USP48Q86UV5 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
USP48Q86UV5 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC23.23■■□□□ 1.31
USP48Q86UV5 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC23.23■■□□□ 1.31
USP48Q86UV5 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
USP48Q86UV5 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
USP48Q86UV5 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC23.23■■□□□ 1.31
USP48Q86UV5 SNX5-210ENST00000481323 562 ntTSL 3 BASIC23.23■■□□□ 1.31
USP48Q86UV5 Z85996.1-201ENST00000494644 937 ntBASIC23.23■■□□□ 1.31
USP48Q86UV5 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC23.23■■□□□ 1.31
USP48Q86UV5 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
USP48Q86UV5 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC23.23■■□□□ 1.31
USP48Q86UV5 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC23.23■■□□□ 1.31
USP48Q86UV5 DFFB-212ENST00000625756 649 ntTSL 5 BASIC23.23■■□□□ 1.31
USP48Q86UV5 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
USP48Q86UV5 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
USP48Q86UV5 AC005332.7-201ENST00000614046 2005 ntBASIC23.23■■□□□ 1.31
USP48Q86UV5 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC23.23■■□□□ 1.31
USP48Q86UV5 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
USP48Q86UV5 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
USP48Q86UV5 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
USP48Q86UV5 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
USP48Q86UV5 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
USP48Q86UV5 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC23.22■■□□□ 1.31
USP48Q86UV5 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC23.22■■□□□ 1.31
USP48Q86UV5 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC23.22■■□□□ 1.31
USP48Q86UV5 DERL1-203ENST00000419562 918 ntTSL 2 BASIC23.22■■□□□ 1.31
USP48Q86UV5 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC23.22■■□□□ 1.31
USP48Q86UV5 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC23.22■■□□□ 1.31
USP48Q86UV5 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC23.22■■□□□ 1.31
USP48Q86UV5 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC23.22■■□□□ 1.31
USP48Q86UV5 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
USP48Q86UV5 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC23.22■■□□□ 1.31
USP48Q86UV5 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
USP48Q86UV5 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC23.22■■□□□ 1.31
USP48Q86UV5 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
USP48Q86UV5 BX119927.1-201ENST00000636596 1552 ntBASIC23.22■■□□□ 1.31
USP48Q86UV5 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
USP48Q86UV5 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC23.22■■□□□ 1.31
USP48Q86UV5 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
USP48Q86UV5 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
USP48Q86UV5 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC23.21■■□□□ 1.31
USP48Q86UV5 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
USP48Q86UV5 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
USP48Q86UV5 AC246785.2-201ENST00000432512 513 ntBASIC23.21■■□□□ 1.31
USP48Q86UV5 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC23.21■■□□□ 1.31
USP48Q86UV5 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC23.21■■□□□ 1.31
USP48Q86UV5 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
USP48Q86UV5 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
USP48Q86UV5 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC23.21■■□□□ 1.31
USP48Q86UV5 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC23.21■■□□□ 1.31
USP48Q86UV5 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC23.21■■□□□ 1.31
USP48Q86UV5 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC23.21■■□□□ 1.31
USP48Q86UV5 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
USP48Q86UV5 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC23.21■■□□□ 1.31
USP48Q86UV5 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
USP48Q86UV5 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC23.2■■□□□ 1.31
USP48Q86UV5 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
USP48Q86UV5 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
USP48Q86UV5 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
USP48Q86UV5 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
USP48Q86UV5 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
USP48Q86UV5 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
USP48Q86UV5 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC23.2■■□□□ 1.3
USP48Q86UV5 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
USP48Q86UV5 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
USP48Q86UV5 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC23.2■■□□□ 1.3
USP48Q86UV5 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
USP48Q86UV5 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
USP48Q86UV5 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC23.2■■□□□ 1.3
USP48Q86UV5 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC23.2■■□□□ 1.3
USP48Q86UV5 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
USP48Q86UV5 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
USP48Q86UV5 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC23.2■■□□□ 1.3
USP48Q86UV5 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC23.2■■□□□ 1.3
USP48Q86UV5 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
USP48Q86UV5 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC23.19■■□□□ 1.3
USP48Q86UV5 TREX1-205ENST00000625293 1783 ntBASIC23.19■■□□□ 1.3
USP48Q86UV5 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
USP48Q86UV5 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
USP48Q86UV5 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC23.19■■□□□ 1.3
USP48Q86UV5 AC093484.2-201ENST00000580996 2166 ntBASIC23.19■■□□□ 1.3
USP48Q86UV5 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
USP48Q86UV5 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC23.19■■□□□ 1.3
USP48Q86UV5 TSPY21P-201ENST00000433481 731 ntBASIC23.19■■□□□ 1.3
USP48Q86UV5 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC23.19■■□□□ 1.3
USP48Q86UV5 TSPY23P-201ENST00000440136 739 ntBASIC23.19■■□□□ 1.3
USP48Q86UV5 AC112907.2-201ENST00000448639 330 ntBASIC23.19■■□□□ 1.3
USP48Q86UV5 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC23.19■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms