Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CSPG4Q6UVK1 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
CSPG4Q6UVK1 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CSPG4Q6UVK1 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC15.63■□□□□ 0.09
CSPG4Q6UVK1 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
CSPG4Q6UVK1 RNA5SP419-201ENST00000515908 135 ntBASIC15.63■□□□□ 0.09
CSPG4Q6UVK1 AL139424.1-201ENST00000607572 797 ntBASIC15.63■□□□□ 0.09
CSPG4Q6UVK1 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC15.63■□□□□ 0.09
CSPG4Q6UVK1 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CSPG4Q6UVK1 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC15.63■□□□□ 0.09
CSPG4Q6UVK1 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CSPG4Q6UVK1 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CSPG4Q6UVK1 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CSPG4Q6UVK1 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CSPG4Q6UVK1 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CSPG4Q6UVK1 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
CSPG4Q6UVK1 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CSPG4Q6UVK1 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC15.62■□□□□ 0.09
CSPG4Q6UVK1 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC15.62■□□□□ 0.09
CSPG4Q6UVK1 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC15.62■□□□□ 0.09
CSPG4Q6UVK1 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
CSPG4Q6UVK1 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
CSPG4Q6UVK1 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
CSPG4Q6UVK1 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
CSPG4Q6UVK1 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
CSPG4Q6UVK1 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CSPG4Q6UVK1 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CSPG4Q6UVK1 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
CSPG4Q6UVK1 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CSPG4Q6UVK1 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CSPG4Q6UVK1 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
CSPG4Q6UVK1 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CSPG4Q6UVK1 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
CSPG4Q6UVK1 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
CSPG4Q6UVK1 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC15.62■□□□□ 0.09
CSPG4Q6UVK1 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC15.62■□□□□ 0.09
CSPG4Q6UVK1 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC15.62■□□□□ 0.09
CSPG4Q6UVK1 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC15.62■□□□□ 0.09
CSPG4Q6UVK1 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
CSPG4Q6UVK1 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
CSPG4Q6UVK1 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CSPG4Q6UVK1 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
CSPG4Q6UVK1 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
CSPG4Q6UVK1 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
CSPG4Q6UVK1 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC15.62■□□□□ 0.09
CSPG4Q6UVK1 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
CSPG4Q6UVK1 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC15.61■□□□□ 0.09
CSPG4Q6UVK1 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
CSPG4Q6UVK1 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC15.61■□□□□ 0.09
CSPG4Q6UVK1 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
CSPG4Q6UVK1 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC15.61■□□□□ 0.09
CSPG4Q6UVK1 LINC00167-201ENST00000530583 1419 ntBASIC15.61■□□□□ 0.09
CSPG4Q6UVK1 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CSPG4Q6UVK1 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC15.61■□□□□ 0.09
CSPG4Q6UVK1 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
CSPG4Q6UVK1 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC15.61■□□□□ 0.09
CSPG4Q6UVK1 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC15.61■□□□□ 0.09
CSPG4Q6UVK1 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CSPG4Q6UVK1 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CSPG4Q6UVK1 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
CSPG4Q6UVK1 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC15.61■□□□□ 0.09
CSPG4Q6UVK1 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
CSPG4Q6UVK1 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CSPG4Q6UVK1 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CSPG4Q6UVK1 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CSPG4Q6UVK1 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CSPG4Q6UVK1 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC15.61■□□□□ 0.09
CSPG4Q6UVK1 TOB2P1-201ENST00000469761 992 ntBASIC15.61■□□□□ 0.09
CSPG4Q6UVK1 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC15.61■□□□□ 0.09
CSPG4Q6UVK1 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC15.61■□□□□ 0.09
CSPG4Q6UVK1 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC15.61■□□□□ 0.09
CSPG4Q6UVK1 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
CSPG4Q6UVK1 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC15.6■□□□□ 0.09
CSPG4Q6UVK1 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC15.6■□□□□ 0.09
CSPG4Q6UVK1 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC15.6■□□□□ 0.09
CSPG4Q6UVK1 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC15.6■□□□□ 0.09
CSPG4Q6UVK1 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
CSPG4Q6UVK1 GPAT2P1-201ENST00000444924 1672 ntBASIC15.6■□□□□ 0.09
CSPG4Q6UVK1 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC15.6■□□□□ 0.09
CSPG4Q6UVK1 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
CSPG4Q6UVK1 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
CSPG4Q6UVK1 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
CSPG4Q6UVK1 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
CSPG4Q6UVK1 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
CSPG4Q6UVK1 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
CSPG4Q6UVK1 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
CSPG4Q6UVK1 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC15.6■□□□□ 0.09
CSPG4Q6UVK1 AC092865.5-201ENST00000545435 363 ntBASIC15.6■□□□□ 0.09
CSPG4Q6UVK1 CIB2-208ENST00000560618 804 ntTSL 2 BASIC15.6■□□□□ 0.09
CSPG4Q6UVK1 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC15.6■□□□□ 0.09
CSPG4Q6UVK1 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
CSPG4Q6UVK1 AL121912.1-201ENST00000603683 238 ntBASIC15.6■□□□□ 0.09
CSPG4Q6UVK1 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
CSPG4Q6UVK1 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC15.6■□□□□ 0.09
CSPG4Q6UVK1 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC15.6■□□□□ 0.09
CSPG4Q6UVK1 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
CSPG4Q6UVK1 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
CSPG4Q6UVK1 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC15.6■□□□□ 0.09
CSPG4Q6UVK1 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
CSPG4Q6UVK1 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC15.6■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 20.1 ms