Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
PTCHD3Q3KNS1 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
PTCHD3Q3KNS1 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
PTCHD3Q3KNS1 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
PTCHD3Q3KNS1 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC18.55■□□□□ 0.56
PTCHD3Q3KNS1 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
PTCHD3Q3KNS1 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
PTCHD3Q3KNS1 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC18.55■□□□□ 0.56
PTCHD3Q3KNS1 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC18.55■□□□□ 0.56
PTCHD3Q3KNS1 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC18.55■□□□□ 0.56
PTCHD3Q3KNS1 PPP1R14BP5-201ENST00000440334 435 ntBASIC18.55■□□□□ 0.56
PTCHD3Q3KNS1 GLRB-205ENST00000512619 728 ntTSL 3 BASIC18.55■□□□□ 0.56
PTCHD3Q3KNS1 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC18.55■□□□□ 0.56
PTCHD3Q3KNS1 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
PTCHD3Q3KNS1 AP000525.1-201ENST00000608286 694 ntBASIC18.55■□□□□ 0.56
PTCHD3Q3KNS1 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
PTCHD3Q3KNS1 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
PTCHD3Q3KNS1 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
PTCHD3Q3KNS1 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
PTCHD3Q3KNS1 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC18.55■□□□□ 0.56
PTCHD3Q3KNS1 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
PTCHD3Q3KNS1 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
PTCHD3Q3KNS1 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
PTCHD3Q3KNS1 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC18.54■□□□□ 0.56
PTCHD3Q3KNS1 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
PTCHD3Q3KNS1 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
PTCHD3Q3KNS1 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
PTCHD3Q3KNS1 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC18.54■□□□□ 0.56
PTCHD3Q3KNS1 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
PTCHD3Q3KNS1 AC079598.2-202ENST00000546624 1451 ntBASIC18.54■□□□□ 0.56
PTCHD3Q3KNS1 MMP23A-201ENST00000234610 1017 ntBASIC18.54■□□□□ 0.56
PTCHD3Q3KNS1 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
PTCHD3Q3KNS1 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
PTCHD3Q3KNS1 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
PTCHD3Q3KNS1 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC18.54■□□□□ 0.56
PTCHD3Q3KNS1 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC18.54■□□□□ 0.56
PTCHD3Q3KNS1 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC18.54■□□□□ 0.56
PTCHD3Q3KNS1 ABBA01031674.1-201ENST00000635145 728 ntBASIC18.54■□□□□ 0.56
PTCHD3Q3KNS1 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
PTCHD3Q3KNS1 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
PTCHD3Q3KNS1 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC18.54■□□□□ 0.56
PTCHD3Q3KNS1 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
PTCHD3Q3KNS1 AC006333.2-201ENST00000607957 2099 ntBASIC18.54■□□□□ 0.56
PTCHD3Q3KNS1 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC18.54■□□□□ 0.56
PTCHD3Q3KNS1 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC18.54■□□□□ 0.56
PTCHD3Q3KNS1 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC18.54■□□□□ 0.56
PTCHD3Q3KNS1 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
PTCHD3Q3KNS1 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
PTCHD3Q3KNS1 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC18.53■□□□□ 0.56
PTCHD3Q3KNS1 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
PTCHD3Q3KNS1 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
PTCHD3Q3KNS1 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
PTCHD3Q3KNS1 GAS2L1P1-201ENST00000420145 1480 ntBASIC18.53■□□□□ 0.56
PTCHD3Q3KNS1 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
PTCHD3Q3KNS1 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC18.53■□□□□ 0.56
PTCHD3Q3KNS1 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
PTCHD3Q3KNS1 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
PTCHD3Q3KNS1 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
PTCHD3Q3KNS1 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
PTCHD3Q3KNS1 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
PTCHD3Q3KNS1 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
PTCHD3Q3KNS1 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
PTCHD3Q3KNS1 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
PTCHD3Q3KNS1 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
PTCHD3Q3KNS1 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC18.53■□□□□ 0.56
PTCHD3Q3KNS1 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
PTCHD3Q3KNS1 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
PTCHD3Q3KNS1 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
PTCHD3Q3KNS1 KRT18P21-201ENST00000515767 1272 ntBASIC18.53■□□□□ 0.56
PTCHD3Q3KNS1 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC18.53■□□□□ 0.56
PTCHD3Q3KNS1 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
PTCHD3Q3KNS1 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC18.53■□□□□ 0.56
PTCHD3Q3KNS1 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC18.53■□□□□ 0.56
PTCHD3Q3KNS1 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC18.53■□□□□ 0.56
PTCHD3Q3KNS1 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC18.53■□□□□ 0.56
PTCHD3Q3KNS1 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC18.53■□□□□ 0.56
PTCHD3Q3KNS1 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
PTCHD3Q3KNS1 AC093503.3-201ENST00000624917 2352 ntBASIC18.53■□□□□ 0.56
PTCHD3Q3KNS1 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
PTCHD3Q3KNS1 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
PTCHD3Q3KNS1 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC18.53■□□□□ 0.56
PTCHD3Q3KNS1 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC18.52■□□□□ 0.56
PTCHD3Q3KNS1 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
PTCHD3Q3KNS1 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
PTCHD3Q3KNS1 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC18.52■□□□□ 0.56
PTCHD3Q3KNS1 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
PTCHD3Q3KNS1 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC18.52■□□□□ 0.56
PTCHD3Q3KNS1 KRT8P9-201ENST00000558927 1449 ntBASIC18.52■□□□□ 0.56
PTCHD3Q3KNS1 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC18.52■□□□□ 0.56
PTCHD3Q3KNS1 UNC93B2-201ENST00000285383 730 ntBASIC18.52■□□□□ 0.56
PTCHD3Q3KNS1 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
PTCHD3Q3KNS1 MIR1238-201ENST00000408483 83 ntBASIC18.52■□□□□ 0.56
PTCHD3Q3KNS1 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC18.52■□□□□ 0.56
PTCHD3Q3KNS1 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC18.52■□□□□ 0.56
PTCHD3Q3KNS1 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
PTCHD3Q3KNS1 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
PTCHD3Q3KNS1 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
PTCHD3Q3KNS1 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.55
PTCHD3Q3KNS1 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.55
PTCHD3Q3KNS1 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 82.7 ms