Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC22.15■■□□□ 1.14
SHROOM1Q2M3G4 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC22.15■■□□□ 1.14
SHROOM1Q2M3G4 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC22.15■■□□□ 1.14
SHROOM1Q2M3G4 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC22.15■■□□□ 1.14
SHROOM1Q2M3G4 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC22.15■■□□□ 1.14
SHROOM1Q2M3G4 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC22.15■■□□□ 1.14
SHROOM1Q2M3G4 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
SHROOM1Q2M3G4 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC22.15■■□□□ 1.14
SHROOM1Q2M3G4 SEC1P-202ENST00000473944 940 ntBASIC22.15■■□□□ 1.14
SHROOM1Q2M3G4 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC22.15■■□□□ 1.14
SHROOM1Q2M3G4 AC069148.1-201ENST00000608741 768 ntBASIC22.15■■□□□ 1.14
SHROOM1Q2M3G4 CLN6-214ENST00000636314 442 ntTSL 3 BASIC22.15■■□□□ 1.14
SHROOM1Q2M3G4 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
SHROOM1Q2M3G4 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
SHROOM1Q2M3G4 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC22.15■■□□□ 1.14
SHROOM1Q2M3G4 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC22.15■■□□□ 1.14
SHROOM1Q2M3G4 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC22.15■■□□□ 1.14
SHROOM1Q2M3G4 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC22.15■■□□□ 1.14
SHROOM1Q2M3G4 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
SHROOM1Q2M3G4 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC22.14■■□□□ 1.14
SHROOM1Q2M3G4 KRT8P3-201ENST00000519669 1449 ntBASIC22.14■■□□□ 1.14
SHROOM1Q2M3G4 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC22.14■■□□□ 1.14
SHROOM1Q2M3G4 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC22.14■■□□□ 1.14
SHROOM1Q2M3G4 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC22.14■■□□□ 1.13
SHROOM1Q2M3G4 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC22.14■■□□□ 1.13
SHROOM1Q2M3G4 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC22.14■■□□□ 1.13
SHROOM1Q2M3G4 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC22.14■■□□□ 1.13
SHROOM1Q2M3G4 MCCD1P1-208ENST00000445732 328 ntBASIC22.14■■□□□ 1.13
SHROOM1Q2M3G4 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC22.14■■□□□ 1.13
SHROOM1Q2M3G4 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC22.14■■□□□ 1.13
SHROOM1Q2M3G4 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC22.14■■□□□ 1.13
SHROOM1Q2M3G4 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC22.14■■□□□ 1.13
SHROOM1Q2M3G4 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC22.14■■□□□ 1.13
SHROOM1Q2M3G4 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
SHROOM1Q2M3G4 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC22.14■■□□□ 1.13
SHROOM1Q2M3G4 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
SHROOM1Q2M3G4 POLI-202ENST00000406285 2030 ntTSL 2 BASIC22.14■■□□□ 1.13
SHROOM1Q2M3G4 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC22.14■■□□□ 1.13
SHROOM1Q2M3G4 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC22.14■■□□□ 1.13
SHROOM1Q2M3G4 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
SHROOM1Q2M3G4 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
SHROOM1Q2M3G4 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
SHROOM1Q2M3G4 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
SHROOM1Q2M3G4 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC22.13■■□□□ 1.13
SHROOM1Q2M3G4 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
SHROOM1Q2M3G4 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
SHROOM1Q2M3G4 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
SHROOM1Q2M3G4 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC22.13■■□□□ 1.13
SHROOM1Q2M3G4 MIR3180-5-201ENST00000583743 153 ntBASIC22.13■■□□□ 1.13
SHROOM1Q2M3G4 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC22.13■■□□□ 1.13
SHROOM1Q2M3G4 CLEC4GP1-201ENST00000596555 870 ntBASIC22.13■■□□□ 1.13
SHROOM1Q2M3G4 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC22.13■■□□□ 1.13
SHROOM1Q2M3G4 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC22.13■■□□□ 1.13
SHROOM1Q2M3G4 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC22.13■■□□□ 1.13
SHROOM1Q2M3G4 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC22.13■■□□□ 1.13
SHROOM1Q2M3G4 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
SHROOM1Q2M3G4 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC22.13■■□□□ 1.13
SHROOM1Q2M3G4 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
SHROOM1Q2M3G4 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC22.13■■□□□ 1.13
SHROOM1Q2M3G4 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC22.13■■□□□ 1.13
SHROOM1Q2M3G4 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
SHROOM1Q2M3G4 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
SHROOM1Q2M3G4 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC22.12■■□□□ 1.13
SHROOM1Q2M3G4 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
SHROOM1Q2M3G4 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
SHROOM1Q2M3G4 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC22.12■■□□□ 1.13
SHROOM1Q2M3G4 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC22.12■■□□□ 1.13
SHROOM1Q2M3G4 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
SHROOM1Q2M3G4 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
SHROOM1Q2M3G4 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
SHROOM1Q2M3G4 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC22.12■■□□□ 1.13
SHROOM1Q2M3G4 KRT18P48-201ENST00000434763 852 ntBASIC22.12■■□□□ 1.13
SHROOM1Q2M3G4 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC22.12■■□□□ 1.13
SHROOM1Q2M3G4 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC22.12■■□□□ 1.13
SHROOM1Q2M3G4 KRT126P-201ENST00000549467 1181 ntBASIC22.12■■□□□ 1.13
SHROOM1Q2M3G4 WDR88-203ENST00000592765 651 ntTSL 5 BASIC22.12■■□□□ 1.13
SHROOM1Q2M3G4 AL157888.1-201ENST00000631930 593 ntBASIC22.12■■□□□ 1.13
SHROOM1Q2M3G4 AC008556.1-201ENST00000610908 2040 ntBASIC22.12■■□□□ 1.13
SHROOM1Q2M3G4 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC22.12■■□□□ 1.13
SHROOM1Q2M3G4 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
SHROOM1Q2M3G4 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
SHROOM1Q2M3G4 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC22.12■■□□□ 1.13
SHROOM1Q2M3G4 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
SHROOM1Q2M3G4 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC22.11■■□□□ 1.13
SHROOM1Q2M3G4 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC22.11■■□□□ 1.13
SHROOM1Q2M3G4 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC22.11■■□□□ 1.13
SHROOM1Q2M3G4 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC22.11■■□□□ 1.13
SHROOM1Q2M3G4 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC22.11■■□□□ 1.13
SHROOM1Q2M3G4 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
SHROOM1Q2M3G4 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
SHROOM1Q2M3G4 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
SHROOM1Q2M3G4 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC22.11■■□□□ 1.13
SHROOM1Q2M3G4 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
SHROOM1Q2M3G4 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
SHROOM1Q2M3G4 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC22.11■■□□□ 1.13
SHROOM1Q2M3G4 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC22.11■■□□□ 1.13
SHROOM1Q2M3G4 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC22.11■■□□□ 1.13
SHROOM1Q2M3G4 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC22.11■■□□□ 1.13
SHROOM1Q2M3G4 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
SHROOM1Q2M3G4 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms