Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
CLRN1P58418 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CLRN1P58418 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
CLRN1P58418 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
CLRN1P58418 PEX7-202ENST00000367756 680 ntTSL 3 BASIC16.96■□□□□ 0.31
CLRN1P58418 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
CLRN1P58418 AC004980.1-204ENST00000429707 299 ntBASIC16.96■□□□□ 0.31
CLRN1P58418 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
CLRN1P58418 TSPY23P-201ENST00000440136 739 ntBASIC16.96■□□□□ 0.31
CLRN1P58418 Z85996.1-201ENST00000494644 937 ntBASIC16.96■□□□□ 0.31
CLRN1P58418 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
CLRN1P58418 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC16.96■□□□□ 0.31
CLRN1P58418 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC16.96■□□□□ 0.31
CLRN1P58418 AF186192.3-201ENST00000583427 947 ntBASIC16.96■□□□□ 0.31
CLRN1P58418 RPS15-203ENST00000586096 570 ntTSL 2 BASIC16.96■□□□□ 0.31
CLRN1P58418 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC16.96■□□□□ 0.31
CLRN1P58418 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CLRN1P58418 AC073195.1-201ENST00000607241 877 ntBASIC16.96■□□□□ 0.31
CLRN1P58418 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CLRN1P58418 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CLRN1P58418 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
CLRN1P58418 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC16.96■□□□□ 0.31
CLRN1P58418 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC16.96■□□□□ 0.31
CLRN1P58418 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CLRN1P58418 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC16.96■□□□□ 0.31
CLRN1P58418 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC16.96■□□□□ 0.31
CLRN1P58418 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CLRN1P58418 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
CLRN1P58418 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CLRN1P58418 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
CLRN1P58418 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC16.96■□□□□ 0.3
CLRN1P58418 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
CLRN1P58418 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
CLRN1P58418 KRT8P41-201ENST00000533985 1514 ntBASIC16.96■□□□□ 0.3
CLRN1P58418 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.3
CLRN1P58418 AL135905.2-201ENST00000584934 1404 ntBASIC16.96■□□□□ 0.3
CLRN1P58418 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CLRN1P58418 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CLRN1P58418 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
CLRN1P58418 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC16.95■□□□□ 0.3
CLRN1P58418 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CLRN1P58418 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CLRN1P58418 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CLRN1P58418 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CLRN1P58418 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CLRN1P58418 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
CLRN1P58418 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
CLRN1P58418 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
CLRN1P58418 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC16.95■□□□□ 0.3
CLRN1P58418 AL031985.4-201ENST00000642138 673 ntBASIC16.95■□□□□ 0.3
CLRN1P58418 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
CLRN1P58418 GOLGA6L5P-202ENST00000515341 1828 ntBASIC16.95■□□□□ 0.3
CLRN1P58418 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
CLRN1P58418 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
CLRN1P58418 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CLRN1P58418 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
CLRN1P58418 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
CLRN1P58418 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC16.95■□□□□ 0.3
CLRN1P58418 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CLRN1P58418 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC16.94■□□□□ 0.3
CLRN1P58418 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CLRN1P58418 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC16.94■□□□□ 0.3
CLRN1P58418 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC16.94■□□□□ 0.3
CLRN1P58418 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CLRN1P58418 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC16.94■□□□□ 0.3
CLRN1P58418 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
CLRN1P58418 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CLRN1P58418 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
CLRN1P58418 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
CLRN1P58418 GAS2L1P1-201ENST00000420145 1480 ntBASIC16.94■□□□□ 0.3
CLRN1P58418 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC16.94■□□□□ 0.3
CLRN1P58418 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC16.94■□□□□ 0.3
CLRN1P58418 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC16.94■□□□□ 0.3
CLRN1P58418 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CLRN1P58418 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CLRN1P58418 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
CLRN1P58418 PPP1R14BP5-201ENST00000440334 435 ntBASIC16.94■□□□□ 0.3
CLRN1P58418 AC098590.1-201ENST00000468126 897 ntBASIC16.94■□□□□ 0.3
CLRN1P58418 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CLRN1P58418 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC16.94■□□□□ 0.3
CLRN1P58418 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CLRN1P58418 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC16.94■□□□□ 0.3
CLRN1P58418 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC16.94■□□□□ 0.3
CLRN1P58418 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CLRN1P58418 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CLRN1P58418 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CLRN1P58418 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
CLRN1P58418 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
CLRN1P58418 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CLRN1P58418 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC16.94■□□□□ 0.3
CLRN1P58418 USP39-202ENST00000409025 1946 ntTSL 5 BASIC16.94■□□□□ 0.3
CLRN1P58418 AC004408.2-201ENST00000623613 2777 ntBASIC16.94■□□□□ 0.3
CLRN1P58418 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC16.94■□□□□ 0.3
CLRN1P58418 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CLRN1P58418 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CLRN1P58418 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CLRN1P58418 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC16.93■□□□□ 0.3
CLRN1P58418 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CLRN1P58418 DERL1-203ENST00000419562 918 ntTSL 2 BASIC16.93■□□□□ 0.3
CLRN1P58418 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms