Protein–RNA interactions for Protein: P58304

VSX2, Visual system homeobox 2, humanhuman

Predicted RBP Predictions only

Length 361 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX2P58304 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC18.15■□□□□ 0.5
VSX2P58304 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
VSX2P58304 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC18.15■□□□□ 0.5
VSX2P58304 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC18.15■□□□□ 0.5
VSX2P58304 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC18.15■□□□□ 0.5
VSX2P58304 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC18.15■□□□□ 0.5
VSX2P58304 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
VSX2P58304 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VSX2P58304 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
VSX2P58304 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
VSX2P58304 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VSX2P58304 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VSX2P58304 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VSX2P58304 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.5
VSX2P58304 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
VSX2P58304 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC18.14■□□□□ 0.5
VSX2P58304 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
VSX2P58304 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC18.14■□□□□ 0.5
VSX2P58304 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
VSX2P58304 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
VSX2P58304 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC18.14■□□□□ 0.5
VSX2P58304 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
VSX2P58304 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
VSX2P58304 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC18.14■□□□□ 0.49
VSX2P58304 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
VSX2P58304 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC18.14■□□□□ 0.49
VSX2P58304 TSPY17P-201ENST00000450329 467 ntBASIC18.14■□□□□ 0.49
VSX2P58304 CA15P1-201ENST00000481698 905 ntBASIC18.14■□□□□ 0.49
VSX2P58304 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC18.14■□□□□ 0.49
VSX2P58304 PPOX-219ENST00000544598 813 ntTSL 2 BASIC18.14■□□□□ 0.49
VSX2P58304 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC18.14■□□□□ 0.49
VSX2P58304 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC18.14■□□□□ 0.49
VSX2P58304 AL023803.3-201ENST00000615559 522 ntBASIC18.14■□□□□ 0.49
VSX2P58304 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
VSX2P58304 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC18.14■□□□□ 0.49
VSX2P58304 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC18.14■□□□□ 0.49
VSX2P58304 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
VSX2P58304 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC18.14■□□□□ 0.49
VSX2P58304 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
VSX2P58304 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
VSX2P58304 AC116562.4-201ENST00000641316 2276 ntBASIC18.14■□□□□ 0.49
VSX2P58304 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC18.14■□□□□ 0.49
VSX2P58304 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
VSX2P58304 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
VSX2P58304 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC18.13■□□□□ 0.49
VSX2P58304 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC18.13■□□□□ 0.49
VSX2P58304 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC18.13■□□□□ 0.49
VSX2P58304 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
VSX2P58304 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC18.13■□□□□ 0.49
VSX2P58304 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
VSX2P58304 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC18.13■□□□□ 0.49
VSX2P58304 AC007663.1-201ENST00000438948 1240 ntBASIC18.13■□□□□ 0.49
VSX2P58304 SLC25A3P1-201ENST00000443844 931 ntBASIC18.13■□□□□ 0.49
VSX2P58304 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC18.13■□□□□ 0.49
VSX2P58304 KRT18P21-201ENST00000515767 1272 ntBASIC18.13■□□□□ 0.49
VSX2P58304 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC18.13■□□□□ 0.49
VSX2P58304 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
VSX2P58304 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC18.13■□□□□ 0.49
VSX2P58304 AC141586.3-201ENST00000562166 1838 ntBASIC18.13■□□□□ 0.49
VSX2P58304 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
VSX2P58304 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC18.13■□□□□ 0.49
VSX2P58304 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
VSX2P58304 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
VSX2P58304 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC18.13■□□□□ 0.49
VSX2P58304 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
VSX2P58304 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
VSX2P58304 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC18.13■□□□□ 0.49
VSX2P58304 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
VSX2P58304 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
VSX2P58304 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC18.12■□□□□ 0.49
VSX2P58304 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
VSX2P58304 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC18.12■□□□□ 0.49
VSX2P58304 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
VSX2P58304 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
VSX2P58304 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
VSX2P58304 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
VSX2P58304 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
VSX2P58304 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC18.12■□□□□ 0.49
VSX2P58304 AL353719.1-201ENST00000566847 864 ntBASIC18.12■□□□□ 0.49
VSX2P58304 FAM87A-204ENST00000613235 858 ntBASIC18.12■□□□□ 0.49
VSX2P58304 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
VSX2P58304 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
VSX2P58304 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC18.12■□□□□ 0.49
VSX2P58304 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
VSX2P58304 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
VSX2P58304 AC092338.2-201ENST00000568827 1415 ntBASIC18.12■□□□□ 0.49
VSX2P58304 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC18.12■□□□□ 0.49
VSX2P58304 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC18.12■□□□□ 0.49
VSX2P58304 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
VSX2P58304 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
VSX2P58304 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
VSX2P58304 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
VSX2P58304 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
VSX2P58304 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
VSX2P58304 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC18.11■□□□□ 0.49
VSX2P58304 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
VSX2P58304 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
VSX2P58304 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
VSX2P58304 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
VSX2P58304 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms