Protein–RNA interactions for Protein: P54753

EPHB3, Ephrin type-B receptor 3, humanhuman

Predictions only

Length 998 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EPHB3P54753 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC19.81■□□□□ 0.76
EPHB3P54753 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
EPHB3P54753 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
EPHB3P54753 SPDYE15P-201ENST00000424157 909 ntBASIC19.81■□□□□ 0.76
EPHB3P54753 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC19.81■□□□□ 0.76
EPHB3P54753 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC19.81■□□□□ 0.76
EPHB3P54753 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC19.81■□□□□ 0.76
EPHB3P54753 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC19.81■□□□□ 0.76
EPHB3P54753 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC19.81■□□□□ 0.76
EPHB3P54753 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC19.81■□□□□ 0.76
EPHB3P54753 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC19.81■□□□□ 0.76
EPHB3P54753 FGF14-AS2-201ENST00000606448 1074 ntBASIC19.81■□□□□ 0.76
EPHB3P54753 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC19.81■□□□□ 0.76
EPHB3P54753 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC19.81■□□□□ 0.76
EPHB3P54753 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
EPHB3P54753 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
EPHB3P54753 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
EPHB3P54753 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC19.81■□□□□ 0.76
EPHB3P54753 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
EPHB3P54753 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC19.81■□□□□ 0.76
EPHB3P54753 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
EPHB3P54753 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
EPHB3P54753 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
EPHB3P54753 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC19.8■□□□□ 0.76
EPHB3P54753 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
EPHB3P54753 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC19.8■□□□□ 0.76
EPHB3P54753 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
EPHB3P54753 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
EPHB3P54753 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
EPHB3P54753 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC19.8■□□□□ 0.76
EPHB3P54753 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC19.8■□□□□ 0.76
EPHB3P54753 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
EPHB3P54753 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC19.8■□□□□ 0.76
EPHB3P54753 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
EPHB3P54753 GRAMD4P1-201ENST00000435181 1110 ntBASIC19.8■□□□□ 0.76
EPHB3P54753 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
EPHB3P54753 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC19.8■□□□□ 0.76
EPHB3P54753 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC19.8■□□□□ 0.76
EPHB3P54753 AC024243.1-201ENST00000609234 778 ntBASIC19.8■□□□□ 0.76
EPHB3P54753 AC083849.1-201ENST00000615227 514 ntBASIC19.8■□□□□ 0.76
EPHB3P54753 HYMAI.1-201ENST00000620949 238 ntBASIC19.8■□□□□ 0.76
EPHB3P54753 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
EPHB3P54753 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
EPHB3P54753 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
EPHB3P54753 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC19.8■□□□□ 0.76
EPHB3P54753 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC19.8■□□□□ 0.76
EPHB3P54753 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
EPHB3P54753 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC19.8■□□□□ 0.76
EPHB3P54753 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
EPHB3P54753 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
EPHB3P54753 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
EPHB3P54753 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC19.8■□□□□ 0.76
EPHB3P54753 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC19.8■□□□□ 0.76
EPHB3P54753 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
EPHB3P54753 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC19.79■□□□□ 0.76
EPHB3P54753 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC19.79■□□□□ 0.76
EPHB3P54753 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
EPHB3P54753 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
EPHB3P54753 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
EPHB3P54753 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
EPHB3P54753 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
EPHB3P54753 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
EPHB3P54753 PCDHAC2-203ENST00000615316 3011 ntBASIC19.79■□□□□ 0.76
EPHB3P54753 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
EPHB3P54753 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
EPHB3P54753 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC19.79■□□□□ 0.76
EPHB3P54753 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
EPHB3P54753 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
EPHB3P54753 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC19.79■□□□□ 0.76
EPHB3P54753 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
EPHB3P54753 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC19.79■□□□□ 0.76
EPHB3P54753 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
EPHB3P54753 RASA4DP-201ENST00000460726 1199 ntBASIC19.79■□□□□ 0.76
EPHB3P54753 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC19.79■□□□□ 0.76
EPHB3P54753 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC19.79■□□□□ 0.76
EPHB3P54753 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC19.79■□□□□ 0.76
EPHB3P54753 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
EPHB3P54753 AC093458.2-201ENST00000623150 629 ntBASIC19.79■□□□□ 0.76
EPHB3P54753 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC19.79■□□□□ 0.76
EPHB3P54753 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
EPHB3P54753 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
EPHB3P54753 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
EPHB3P54753 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
EPHB3P54753 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC19.79■□□□□ 0.76
EPHB3P54753 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC19.79■□□□□ 0.76
EPHB3P54753 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
EPHB3P54753 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
EPHB3P54753 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC19.78■□□□□ 0.76
EPHB3P54753 TEX21P-204ENST00000641479 1693 ntBASIC19.78■□□□□ 0.76
EPHB3P54753 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
EPHB3P54753 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
EPHB3P54753 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC19.78■□□□□ 0.76
EPHB3P54753 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
EPHB3P54753 BET1L-202ENST00000332865 533 ntTSL 5 BASIC19.78■□□□□ 0.76
EPHB3P54753 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
EPHB3P54753 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
EPHB3P54753 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC19.78■□□□□ 0.76
EPHB3P54753 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
EPHB3P54753 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
EPHB3P54753 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms