Protein–RNA interactions for Protein: P35244

RPA3, Replication protein A 14 kDa subunit, humanhuman

Predicted RBP Predictions only

Length 121 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPA3P35244 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
RPA3P35244 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
RPA3P35244 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RPA3P35244 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC19.17■□□□□ 0.66
RPA3P35244 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RPA3P35244 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC19.17■□□□□ 0.66
RPA3P35244 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
RPA3P35244 KRT17P3-201ENST00000420566 1262 ntBASIC19.17■□□□□ 0.66
RPA3P35244 POM121L13P-201ENST00000422362 380 ntBASIC19.17■□□□□ 0.66
RPA3P35244 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
RPA3P35244 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC19.17■□□□□ 0.66
RPA3P35244 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC19.17■□□□□ 0.66
RPA3P35244 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC19.17■□□□□ 0.66
RPA3P35244 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC19.17■□□□□ 0.66
RPA3P35244 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC19.17■□□□□ 0.66
RPA3P35244 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC19.17■□□□□ 0.66
RPA3P35244 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC19.17■□□□□ 0.66
RPA3P35244 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC19.17■□□□□ 0.66
RPA3P35244 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
RPA3P35244 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
RPA3P35244 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
RPA3P35244 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RPA3P35244 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
RPA3P35244 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC19.17■□□□□ 0.66
RPA3P35244 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
RPA3P35244 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC19.17■□□□□ 0.66
RPA3P35244 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RPA3P35244 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
RPA3P35244 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
RPA3P35244 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC19.17■□□□□ 0.66
RPA3P35244 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
RPA3P35244 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
RPA3P35244 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
RPA3P35244 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
RPA3P35244 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
RPA3P35244 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC19.16■□□□□ 0.66
RPA3P35244 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
RPA3P35244 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RPA3P35244 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
RPA3P35244 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC19.16■□□□□ 0.66
RPA3P35244 FAM201B-201ENST00000458407 597 ntBASIC19.16■□□□□ 0.66
RPA3P35244 MAX-217ENST00000557277 728 ntTSL 3 BASIC19.16■□□□□ 0.66
RPA3P35244 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
RPA3P35244 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
RPA3P35244 KLF2-202ENST00000592003 564 ntTSL 3 BASIC19.16■□□□□ 0.66
RPA3P35244 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
RPA3P35244 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
RPA3P35244 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC19.16■□□□□ 0.66
RPA3P35244 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC19.16■□□□□ 0.66
RPA3P35244 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC19.16■□□□□ 0.66
RPA3P35244 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
RPA3P35244 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
RPA3P35244 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
RPA3P35244 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
RPA3P35244 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
RPA3P35244 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
RPA3P35244 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RPA3P35244 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
RPA3P35244 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RPA3P35244 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RPA3P35244 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC19.15■□□□□ 0.66
RPA3P35244 ANKRD18DP-204ENST00000455355 1975 ntBASIC19.15■□□□□ 0.66
RPA3P35244 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC19.15■□□□□ 0.66
RPA3P35244 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RPA3P35244 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RPA3P35244 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
RPA3P35244 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
RPA3P35244 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RPA3P35244 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
RPA3P35244 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RPA3P35244 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
RPA3P35244 POU5F1P3-201ENST00000428824 1078 ntBASIC19.15■□□□□ 0.66
RPA3P35244 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
RPA3P35244 AL121906.2-201ENST00000621597 723 ntBASIC19.15■□□□□ 0.66
RPA3P35244 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC19.15■□□□□ 0.66
RPA3P35244 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC19.15■□□□□ 0.66
RPA3P35244 UBQLN4P1-201ENST00000461599 1801 ntBASIC19.15■□□□□ 0.66
RPA3P35244 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RPA3P35244 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RPA3P35244 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
RPA3P35244 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC19.15■□□□□ 0.66
RPA3P35244 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RPA3P35244 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RPA3P35244 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC19.15■□□□□ 0.66
RPA3P35244 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
RPA3P35244 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
RPA3P35244 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
RPA3P35244 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RPA3P35244 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC19.15■□□□□ 0.66
RPA3P35244 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.66
RPA3P35244 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC19.14■□□□□ 0.66
RPA3P35244 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
RPA3P35244 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
RPA3P35244 MADD-208ENST00000405573 1823 ntTSL 5 BASIC19.14■□□□□ 0.65
RPA3P35244 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC19.14■□□□□ 0.65
RPA3P35244 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
RPA3P35244 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
RPA3P35244 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
RPA3P35244 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
RPA3P35244 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms