Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
COL9A1P20849 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC19.51■□□□□ 0.71
COL9A1P20849 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
COL9A1P20849 REXO1L6P-202ENST00000619970 1078 ntBASIC19.51■□□□□ 0.71
COL9A1P20849 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
COL9A1P20849 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC19.51■□□□□ 0.71
COL9A1P20849 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC19.51■□□□□ 0.71
COL9A1P20849 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
COL9A1P20849 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC19.51■□□□□ 0.71
COL9A1P20849 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC19.51■□□□□ 0.71
COL9A1P20849 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC19.51■□□□□ 0.71
COL9A1P20849 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC19.51■□□□□ 0.71
COL9A1P20849 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC19.51■□□□□ 0.71
COL9A1P20849 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
COL9A1P20849 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
COL9A1P20849 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
COL9A1P20849 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
COL9A1P20849 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
COL9A1P20849 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
COL9A1P20849 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC19.5■□□□□ 0.71
COL9A1P20849 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC19.5■□□□□ 0.71
COL9A1P20849 KRT18P67-201ENST00000432816 1264 ntBASIC19.5■□□□□ 0.71
COL9A1P20849 AF186996.4-201ENST00000467186 377 ntBASIC19.5■□□□□ 0.71
COL9A1P20849 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC19.5■□□□□ 0.71
COL9A1P20849 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
COL9A1P20849 CHMP2B-205ENST00000494980 1175 ntTSL 3 BASIC19.5■□□□□ 0.71
COL9A1P20849 GLRB-205ENST00000512619 728 ntTSL 3 BASIC19.5■□□□□ 0.71
COL9A1P20849 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC19.5■□□□□ 0.71
COL9A1P20849 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC19.5■□□□□ 0.71
COL9A1P20849 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC19.5■□□□□ 0.71
COL9A1P20849 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
COL9A1P20849 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC19.5■□□□□ 0.71
COL9A1P20849 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC19.5■□□□□ 0.71
COL9A1P20849 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC19.5■□□□□ 0.71
COL9A1P20849 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC19.5■□□□□ 0.71
COL9A1P20849 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC19.5■□□□□ 0.71
COL9A1P20849 AL391422.3-201ENST00000603791 2761 ntBASIC19.5■□□□□ 0.71
COL9A1P20849 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
COL9A1P20849 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC19.5■□□□□ 0.71
COL9A1P20849 AL137060.1-201ENST00000618151 2648 ntBASIC19.5■□□□□ 0.71
COL9A1P20849 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
COL9A1P20849 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
COL9A1P20849 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
COL9A1P20849 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
COL9A1P20849 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
COL9A1P20849 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC19.49■□□□□ 0.71
COL9A1P20849 DNAJB3-201ENST00000446806 729 ntBASIC19.49■□□□□ 0.71
COL9A1P20849 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC19.49■□□□□ 0.71
COL9A1P20849 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC19.49■□□□□ 0.71
COL9A1P20849 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC19.49■□□□□ 0.71
COL9A1P20849 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
COL9A1P20849 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC19.49■□□□□ 0.71
COL9A1P20849 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
COL9A1P20849 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
COL9A1P20849 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC19.49■□□□□ 0.71
COL9A1P20849 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
COL9A1P20849 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC19.49■□□□□ 0.71
COL9A1P20849 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
COL9A1P20849 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
COL9A1P20849 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
COL9A1P20849 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
COL9A1P20849 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
COL9A1P20849 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
COL9A1P20849 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC19.49■□□□□ 0.71
COL9A1P20849 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC19.49■□□□□ 0.71
COL9A1P20849 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
COL9A1P20849 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
COL9A1P20849 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
COL9A1P20849 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
COL9A1P20849 YBX2P1-201ENST00000394192 760 ntBASIC19.48■□□□□ 0.71
COL9A1P20849 IGHV3-22-201ENST00000520721 359 ntBASIC19.48■□□□□ 0.71
COL9A1P20849 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
COL9A1P20849 AC148477.8-201ENST00000624298 468 ntBASIC19.48■□□□□ 0.71
COL9A1P20849 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
COL9A1P20849 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
COL9A1P20849 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC19.48■□□□□ 0.71
COL9A1P20849 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
COL9A1P20849 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC19.48■□□□□ 0.71
COL9A1P20849 AP005212.1-201ENST00000581547 1997 ntBASIC19.48■□□□□ 0.71
COL9A1P20849 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
COL9A1P20849 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
COL9A1P20849 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
COL9A1P20849 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
COL9A1P20849 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
COL9A1P20849 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC19.47■□□□□ 0.71
COL9A1P20849 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
COL9A1P20849 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
COL9A1P20849 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
COL9A1P20849 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
COL9A1P20849 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
COL9A1P20849 MIR770-201ENST00000390219 98 ntBASIC19.47■□□□□ 0.71
COL9A1P20849 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
COL9A1P20849 AC007274.1-201ENST00000439805 662 ntBASIC19.47■□□□□ 0.71
COL9A1P20849 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC19.47■□□□□ 0.71
COL9A1P20849 AC074051.2-201ENST00000565115 352 ntBASIC19.47■□□□□ 0.71
COL9A1P20849 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
COL9A1P20849 AC099336.1-202ENST00000602961 463 ntBASIC19.47■□□□□ 0.71
COL9A1P20849 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC19.47■□□□□ 0.71
COL9A1P20849 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
COL9A1P20849 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms